PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34151-34200 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 84.6154 | 93.4673 | 0 | 0 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.4975 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 66.6667 | 100.0000 | 50.0000 | 99.4483 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 60.0000 | 89.5833 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 98.3193 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.2593 | 72.7273 | 50.0000 | 99.8444 | 8 | 3 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 63.6364 | 87.5000 | 50.0000 | 99.8246 | 7 | 1 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 61.5385 | 80.0000 | 50.0000 | 99.8383 | 8 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.8173 | 7 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | homalt | 96.8254 | 94.8187 | 98.9189 | 93.7500 | 183 | 10 | 183 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7705 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.6047 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7395 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.5646 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2212 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 99.4356 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2504 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 99.4398 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 99.2548 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.3896 | 5.6338 | 66.6667 | 80.6452 | 4 | 67 | 4 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5348 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 81.8182 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 89.0909 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 33.3333 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 33.3333 | 94.8276 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 89.2857 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 33.3333 | 96.7742 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | * | 98.4227 | 98.1132 | 98.7342 | 40.6015 | 156 | 3 | 156 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | het | 98.2456 | 98.8235 | 97.6744 | 47.5610 | 84 | 1 | 84 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 57.9710 | 51.2821 | 66.6667 | 62.5000 | 20 | 19 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.4006 | 59.4595 | 83.3333 | 67.5676 | 22 | 15 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 61.1189 | 45.6140 | 92.5926 | 99.6543 | 26 | 31 | 25 | 2 | 2 | 100.0000 | |