PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34101-34150 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | het | 77.7778 | 77.7778 | 77.7778 | 82.3529 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | * | 77.2727 | 68.0000 | 89.4737 | 89.3258 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | * | 77.2727 | 68.0000 | 89.4737 | 90.9091 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | * | 79.1667 | 70.3704 | 90.4762 | 90.5830 | 19 | 8 | 19 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | homalt | 82.8025 | 72.2222 | 97.0149 | 78.0328 | 65 | 25 | 65 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | hetalt | 82.7740 | 82.2222 | 83.3333 | 86.0465 | 37 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3333 | 100.0000 | 71.4286 | 70.8333 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | func_cds | homalt | 99.9716 | 99.9810 | 99.9621 | 22.5825 | 5274 | 1 | 5274 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | hetalt | 95.0820 | 96.6667 | 93.5484 | 84.9515 | 29 | 1 | 29 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | hetalt | 95.2381 | 96.7742 | 93.7500 | 84.5411 | 30 | 1 | 30 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 83.9744 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.3801 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.4651 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3333 | 100.0000 | 71.4286 | 70.8333 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | hetalt | 24.6914 | 15.1515 | 66.6667 | 99.0491 | 5 | 28 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 0 | 3 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 0 | 3 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 92.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | ti | HG002compoundhet | hetalt | 97.1675 | 94.8187 | 99.6357 | 22.1277 | 549 | 30 | 547 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.0000 | 91.6667 | 84.6154 | 94.6058 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.0000 | 91.6667 | 84.6154 | 94.6058 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 87.3016 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 90.5660 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | homalt | 87.2580 | 77.7523 | 99.4118 | 93.2647 | 339 | 97 | 338 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 81.8182 | 0 | 47 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 86.6667 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 88.8889 | 91.3043 | 0 | 0 | 16 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 92.0904 | 0 | 0 | 12 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 93.5484 | 90.7463 | 0 | 0 | 29 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 94.7368 | 94.0718 | 0 | 0 | 36 | 2 | 0 | 0.0000 | |