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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
33901-33950 / 86044 show all
ltrigg-rtg1INDELD1_5map_l150_m0_e0*
95.5142
92.0415
99.2593
85.2378
2662326821
50.0000
ltrigg-rtg1INDELD1_5map_l150_m1_e0homalt
99.3435
99.5614
99.1266
85.6156
227122722
100.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e0homalt
99.3814
99.5868
99.1770
86.5150
241124122
100.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e1homalt
99.3980
99.5968
99.2000
86.4352
247124822
100.0000
ltrigg-rtg1INDELD1_5map_sirenhetalt
95.1069
92.8571
97.4684
93.1245
7867722
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3000
98.9583
99.6441
61.5332
570656020
0.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2779
98.6498
99.9141
39.6579
233832232622
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
98.6680
98.1203
99.2218
79.3408
261525521
50.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.4293
97.9167
98.9474
40.2516
188418820
0.0000
ltrigg-rtg1INDELD6_15segdup*
96.5000
94.2408
98.8701
91.4327
1801117520
0.0000
ltrigg-rtg1INDELD6_15segduphet
97.1910
96.7391
97.6471
92.1803
8938320
0.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.1672
58.9474
96.4286
75.9657
56395420
0.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
79.5056
67.4419
96.8254
74.5968
58286122
100.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
67.7419
56.0000
85.7143
83.1325
14111222
100.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.9584
74.7191
98.4496
67.6692
1334512722
100.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.9727
76.0163
98.9305
71.6667
1875918520
0.0000
ltrigg-rtg1INDELI16_PLUSmap_sirenhet
82.7586
73.4694
94.7368
66.9565
36133620
0.0000
ltrigg-rtg1INDELI16_PLUSmap_sirenhomalt
78.9474
71.4286
88.2353
70.6897
1561522
100.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2265
98.7673
99.6899
57.2281
641864321
50.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3863
99.1243
99.6497
55.8050
566556921
50.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.1881
98.5569
99.8274
68.1681
116117115721
50.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8082
99.6679
99.9488
76.8939
390213390221
50.0000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9110
99.9703
35.3939
67396673922
100.0000
jli-customSNP*tech_badpromoters*
98.4026
98.0892
98.7179
48.6842
154315422
100.0000
jli-customSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
46.7105
7917922
100.0000
jli-customSNPtimap_l250_m0_e0homalt
99.1945
98.8532
99.5381
89.7296
431543122
100.0000
jli-customSNPtimap_l250_m1_e0homalt
99.3746
98.8799
99.8743
84.2895
158918158922
100.0000
jli-customSNPtimap_l250_m2_e0homalt
99.4256
98.9708
99.8846
85.5643
173118173122
100.0000
jli-customSNPtimap_l250_m2_e1homalt
99.4331
98.9842
99.8861
85.6066
175418175422
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8912
99.8550
99.9274
36.4538
27544275422
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
91.4483
86.2069
97.3684
99.9056
75127420
0.0000
jmaeng-gatkINDEL*map_l250_m1_e0homalt
97.2222
96.3303
98.1308
95.0256
105410522
100.0000
jmaeng-gatkINDEL*map_l250_m2_e0homalt
97.3684
96.5217
98.2301
95.4673
111411122
100.0000
jmaeng-gatkINDEL*map_l250_m2_e1homalt
97.3913
96.5517
98.2456
95.5277
112411222
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2070
98.8739
99.5423
76.1072
439543520
0.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7238
100.0000
99.4490
62.8074
361036121
50.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6757
99.7835
99.5680
64.0528
461146122
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
98.8636
100.0000
97.7528
84.9916
8708720
0.0000
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
97.9592
100.0000
96.0000
87.7451
5204820
0.0000
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
92.1348
89.1304
95.3488
68.1481
4154122
100.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
97.4729
1201220
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m0_e0het
90.0000
100.0000
81.8182
97.5281
90920
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m1_e0*
96.4286
100.0000
93.1034
97.1173
2702720
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m1_e0het
95.2381
100.0000
90.9091
97.1831
2002020
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m2_e0het
95.2381
100.0000
90.9091
97.5771
2002020
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m2_e1het
95.2381
100.0000
90.9091
97.6319
2002020
0.0000
jmaeng-gatkINDELD16_PLUSmap_l150_m0_e0*
87.5000
100.0000
77.7778
97.6623
70720
0.0000
jmaeng-gatkINDELD16_PLUSmap_l150_m0_e0het
87.5000
100.0000
77.7778
97.1154
70720
0.0000
jmaeng-gatkINDELD16_PLUSmap_l150_m1_e0*
93.7500
100.0000
88.2353
97.5469
1501520
0.0000
jmaeng-gatkINDELD16_PLUSmap_l150_m1_e0het
93.3333
100.0000
87.5000
97.0909
1401420
0.0000