PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33501-33550 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 95.7746 | 95.7746 | 95.7746 | 94.6049 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.8690 | 92.8358 | 99.1071 | 67.4419 | 311 | 24 | 333 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1071 | 92.9674 | 99.4662 | 64.2038 | 542 | 41 | 559 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4380 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.4604 | 91.3394 | 99.9708 | 56.0929 | 10209 | 968 | 10266 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0184 | 92.3880 | 99.9457 | 61.4714 | 5486 | 452 | 5522 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0050 | 99.5000 | 98.5149 | 61.3027 | 199 | 1 | 199 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4479 | 99.1196 | 99.7784 | 77.4446 | 1351 | 12 | 1351 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 64.2357 | 968 | 0 | 968 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9445 | 98.1905 | 99.7101 | 62.6893 | 1031 | 19 | 1032 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2366 | 99.3884 | 99.0854 | 83.4677 | 325 | 2 | 325 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.7048 | 339 | 2 | 339 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 84.8990 | 341 | 2 | 341 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.7406 | 98.9899 | 98.4925 | 87.1030 | 196 | 2 | 196 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.7593 | 99.0050 | 98.5149 | 88.5292 | 199 | 2 | 199 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7775 | 99.0196 | 98.5366 | 88.5921 | 202 | 2 | 202 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.8539 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | * | hetalt | 95.7466 | 91.8723 | 99.9620 | 36.0612 | 7856 | 695 | 7896 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.8171 | 162 | 16 | 162 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 67.8414 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.5000 | 84.8485 | 90.3226 | 93.7876 | 28 | 5 | 28 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 82.3529 | 82.3529 | 82.3529 | 95.1429 | 14 | 3 | 14 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7449 | 99.5401 | 99.9505 | 54.6217 | 6060 | 28 | 6060 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m0_e0 | homalt | 76.4825 | 61.9363 | 99.9583 | 70.3301 | 7197 | 4423 | 7197 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l125_m1_e0 | homalt | 76.7144 | 62.2360 | 99.9715 | 73.5225 | 10521 | 6384 | 10521 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | homalt | 77.2870 | 62.9928 | 99.9726 | 75.5188 | 10945 | 6430 | 10945 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e1 | homalt | 77.4376 | 63.1930 | 99.9729 | 75.4660 | 11079 | 6453 | 11079 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8975 | 99.9180 | 99.8770 | 52.7132 | 2437 | 2 | 2437 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8418 | 99.8734 | 99.8102 | 55.3516 | 1578 | 2 | 1578 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_siren | hetalt | 94.0758 | 89.8785 | 98.6842 | 91.0728 | 222 | 25 | 225 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | segdup | homalt | 99.6351 | 99.5833 | 99.6868 | 92.9210 | 956 | 4 | 955 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 88.0000 | 96.2853 | 0 | 0 | 22 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 95.5224 | 89.8792 | 0 | 0 | 64 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.7941 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.9778 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |