PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | segdup | homalt | 99.6825 | 100.0000 | 99.3671 | 91.5023 | 473 | 0 | 471 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.9057 | 92.6415 | 99.4083 | 55.1724 | 491 | 39 | 504 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 68.6170 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2751 | 94.3820 | 98.2456 | 64.3006 | 168 | 10 | 168 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6522 | 95.0617 | 96.2500 | 69.2308 | 77 | 4 | 77 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5890 | 98.0226 | 99.1620 | 62.9783 | 347 | 7 | 355 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3146 | 98.3051 | 98.3240 | 64.3426 | 174 | 3 | 176 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.0148 | 90.6040 | 97.6923 | 66.7519 | 135 | 14 | 127 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 91.6667 | 87.5000 | 70.7317 | 22 | 2 | 21 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4842 | 97.5124 | 99.4755 | 64.3614 | 588 | 15 | 569 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2797 | 99.2823 | 99.2771 | 46.2435 | 415 | 3 | 412 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | * | 96.2876 | 93.7705 | 98.9437 | 78.2708 | 286 | 19 | 281 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | homalt | 99.4431 | 99.3641 | 99.5223 | 90.1798 | 625 | 4 | 625 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | homalt | 99.6541 | 99.4316 | 99.8777 | 84.3152 | 2449 | 14 | 2449 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | homalt | 99.6681 | 99.4481 | 99.8891 | 85.6712 | 2703 | 15 | 2703 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 74.0741 | 83.3333 | 66.6667 | 99.0712 | 5 | 1 | 6 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 96.8750 | 0 | 26 | 0 | 3 | 3 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 56.0000 | 46.6667 | 70.0000 | 83.8710 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 73.6842 | 77.7778 | 70.0000 | 80.3922 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 56.0000 | 46.6667 | 70.0000 | 86.4865 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 73.6842 | 77.7778 | 70.0000 | 83.6066 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 56.0000 | 46.6667 | 70.0000 | 86.6667 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 73.6842 | 77.7778 | 70.0000 | 83.8710 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.6190 | 96.1877 | 99.0937 | 79.2996 | 328 | 13 | 328 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.6331 | 96.2099 | 99.0991 | 79.6206 | 330 | 13 | 330 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 56.2500 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 45.0000 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 62.0690 | 52.9412 | 75.0000 | 93.5135 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 88.8547 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 89.5678 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 89.5879 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.4933 | 95.4980 | 99.5739 | 64.9402 | 700 | 33 | 701 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2800 | 98.7275 | 99.8388 | 67.9580 | 1862 | 24 | 1858 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.9130 | 98.1582 | 99.6795 | 48.5714 | 906 | 17 | 933 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1114 | 91.8919 | 98.5646 | 61.0075 | 204 | 18 | 206 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.7840 | 88.0000 | 93.7500 | 82.8571 | 44 | 6 | 45 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.6154 | 95.1515 | 98.1250 | 91.0814 | 157 | 8 | 157 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3265 | 95.1613 | 97.5207 | 90.8055 | 118 | 6 | 118 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.0690 | 52.9412 | 75.0000 | 99.6461 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |