PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32601-32650 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 98.1928 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| ciseli-custom | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 98.8142 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 98.4293 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 63.6364 | 70.0000 | 99.4592 | 7 | 4 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 76.9231 | 76.9231 | 76.9231 | 97.6234 | 10 | 3 | 10 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1039 | 0 | 1 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 44.4444 | 50.0000 | 40.0000 | 97.7169 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 98.5258 | 3 | 3 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 25.0000 | 25.0000 | 25.0000 | 98.6486 | 1 | 3 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 96.3415 | 0 | 3 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 6.6667 | 3.8462 | 25.0000 | 97.1223 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 8.0000 | 0.0000 | 94.3396 | 2 | 23 | 0 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 28.5714 | 22.2222 | 40.0000 | 97.6526 | 2 | 7 | 2 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 25.4545 | 15.5556 | 70.0000 | 98.0198 | 7 | 38 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | homalt | 96.9136 | 95.7317 | 98.1250 | 90.5716 | 157 | 7 | 157 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.0645 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5455 | 100.0000 | 89.6552 | 92.7861 | 1 | 0 | 26 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3077 | 100.0000 | 85.7143 | 93.1596 | 1 | 0 | 18 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 96.7742 | 93.6039 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.7742 | 83.0601 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 96.2025 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 95.0820 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 96.7391 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 96.8085 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 95.7746 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.4444 | 94.7674 | 98.1818 | 75.3363 | 163 | 9 | 162 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9804 | 98.5801 | 99.3840 | 55.4845 | 486 | 7 | 484 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7173 | 98.5185 | 98.9170 | 61.7931 | 266 | 4 | 274 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5517 | 96.5517 | 96.5517 | 80.4494 | 84 | 3 | 84 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.7313 | 96.1538 | 95.3125 | 80.8383 | 50 | 2 | 61 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.4481 | 96.8153 | 98.0892 | 60.3535 | 152 | 5 | 154 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.8383 | 98.3607 | 97.3214 | 62.5418 | 60 | 1 | 109 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 94.6429 | 12 | 0 | 12 | 3 | 0 | 0.0000 | |