PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.2381 | 94.1176 | 96.3855 | 88.5675 | 80 | 5 | 80 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 97.9522 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 94.2676 | 90.5405 | 98.3146 | 84.3310 | 134 | 14 | 175 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.6446 | 90.7895 | 98.8417 | 83.6490 | 207 | 21 | 256 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9644 | 91.3223 | 98.9091 | 84.1224 | 221 | 21 | 272 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8670 | 91.1290 | 98.9247 | 84.2195 | 226 | 22 | 276 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 57.6307 | 42.1875 | 90.9091 | 76.0870 | 27 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 58.4551 | 43.0769 | 90.9091 | 76.7606 | 28 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 57.2597 | 41.7910 | 90.9091 | 76.9231 | 28 | 39 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 38.0952 | 25.0000 | 80.0000 | 78.2609 | 2 | 6 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 22.9885 | 13.3333 | 83.3333 | 78.5714 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 35.0877 | 22.2222 | 83.3333 | 78.0488 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 35.0877 | 22.2222 | 83.3333 | 81.0526 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 6.7039 | 3.6585 | 40.0000 | 94.4444 | 3 | 79 | 2 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 94.6345 | 91.2281 | 98.3051 | 82.6130 | 104 | 10 | 174 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 92.3139 | 88.0597 | 97.0000 | 87.0634 | 59 | 8 | 97 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 12.0040 | 6.4309 | 90.0000 | 57.7465 | 20 | 291 | 27 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | * | 63.3484 | 53.8462 | 76.9231 | 60.6061 | 7 | 6 | 10 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | het | 80.0000 | 85.7143 | 75.0000 | 62.5000 | 6 | 1 | 9 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1995 | 98.5461 | 99.8616 | 38.6640 | 2169 | 32 | 2164 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.3173 | 97.2973 | 99.3590 | 56.7867 | 468 | 13 | 465 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7940 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4333 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | * | 99.1781 | 100.0000 | 98.3696 | 47.7273 | 180 | 0 | 181 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | het | 97.5610 | 100.0000 | 95.2381 | 64.4068 | 59 | 0 | 60 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2182 | 92.7585 | 99.9459 | 61.2554 | 5508 | 430 | 5546 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.7509 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0897 | 98.4762 | 99.7110 | 62.4593 | 1034 | 16 | 1035 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.9712 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.8329 | 326 | 1 | 326 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.0480 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4186 | 99.7085 | 99.1304 | 85.2375 | 342 | 1 | 342 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.4372 | 197 | 1 | 197 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.8462 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9009 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.7267 | 93.7500 | 99.8985 | 40.2385 | 2925 | 195 | 2954 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.3618 | 162 | 16 | 162 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4602 | 95.6140 | 97.3214 | 89.5814 | 109 | 5 | 109 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7983 | 96.6102 | 95.0000 | 91.2152 | 57 | 2 | 57 | 3 | 1 | 33.3333 | |