PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3201-3250 / 86044 show all
ghariani-varprowlSNPtimap_l100_m2_e1*
98.6004
99.0118
98.1924
70.8832
4899648948998902186
20.6208
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
51.7650
93.7381
35.7550
67.8055
49433502902894
99.1131
gduggal-snapplatINDELD1_5HG002complexvarhomalt
88.1224
84.5537
92.0057
61.9576
8961163710381902472
52.3282
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
70.1373
58.7236
87.0583
47.6620
608242756061901793
88.0133
jlack-gatkINDELD6_15**
96.4774
96.4127
96.5422
54.8116
2515693625156901581
64.4839
jlack-gatkSNP*map_l250_m2_e1het
91.1258
98.0243
85.1345
94.1114
5160104516090160
6.6593
ckim-isaacINDELD1_5HG002complexvar*
94.1980
91.4993
97.0606
47.3235
29934278129752901456
50.6104
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.7629
99.8762
95.7372
62.6774
201742520213900534
59.3333
ciseli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
4.4684
35.0877
2.3861
92.1778
20372290012
1.3333
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
63.7991
90.6900
49.2081
87.2696
828858708982
0.2227
gduggal-snapvardINDELC6_15*het
48.6270
100.0000
32.1240
84.8018
70425898137
15.2561
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1234
99.6134
96.6774
60.9972
275711072612989885
9.4655
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
34.5930
24.0897
61.3362
63.5277
142945031423897832
92.7536
jpowers-varprowlSNP*map_l125_m1_e0*
97.5600
97.1209
98.0031
75.2469
44022130544022897282
31.4381
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.3231
87.8558
34.2857
65.7723
46364468897893
99.5541
jpowers-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.5149
76.6385
57.2111
69.3456
11813601198896886
98.8839
anovak-vgINDEL*map_sirenhet
71.2155
65.8829
77.4874
82.2828
297015383084896298
33.2589
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
61.2783
55.3295
68.6604
44.0399
204016471963896675
75.3348
mlin-fermikitINDELD1_5HG002complexvar*
96.3667
95.5494
97.1980
54.2316
31259145631081896836
93.3036
gduggal-snapfbSNPtvHG002complexvarhomalt
99.3543
99.6457
99.0647
24.8993
9477433794793895159
17.7654
eyeh-varpipeINDELD16_PLUS*homalt
49.8532
50.8274
48.9155
43.2091
860832857895865
96.6480
eyeh-varpipeINDELD6_15*het
91.9882
92.1325
91.8444
46.7075
1068091210079895860
96.0894
cchapple-customSNPtvmap_l100_m2_e1*
97.2075
97.9156
96.5096
71.7543
2475652724747895134
14.9721
cchapple-customSNPtvmap_l100_m2_e1het
96.3138
98.0926
94.5983
75.6213
1563430415674895134
14.9721
jlack-gatkSNP*map_l250_m2_e0het
91.0733
98.0169
85.0484
94.0579
5091103509189558
6.4805
hfeng-pmm2INDEL*HG002compoundhet*
94.6829
92.5968
96.8651
60.5702
27742221827624894877
98.0984
ghariani-varprowlSNPtimap_l100_m2_e0*
98.5956
99.0053
98.1892
70.8668
4847448748476894185
20.6935
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
47.8556
54.0432
42.9393
43.9068
675574672893863
96.6405
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
47.8556
54.0432
42.9393
43.9068
675574672893863
96.6405
jpowers-varprowlINDELI6_15HG002complexvar*
68.3061
61.4775
76.8413
54.9585
294618462963893875
97.9843
qzeng-customSNPtiHG002complexvar*
99.1315
98.4529
99.8194
18.2769
5005717866493623893400
44.7928
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.3372
98.5927
92.2897
84.7602
1064915210677892112
12.5561
gduggal-snapvardINDEL*map_l100_m1_e0het
84.8981
94.4519
77.0994
87.8634
21111242993889409
46.0067
mlin-fermikitSNP*map_l150_m0_e0homalt
52.6207
43.4581
66.6792
59.8524
177723121777888815
91.7793
ndellapenna-hhgaSNPti**
99.8903
99.8233
99.9574
16.8793
208182536862081847888298
33.5586
dgrover-gatkINDEL**het
99.5990
99.6559
99.5422
61.2168
193465668193091888555
62.5000
cchapple-customSNPtvmap_l100_m2_e0*
97.1975
97.9028
96.5023
71.7198
2450852524500888133
14.9775
cchapple-customSNPtvmap_l100_m2_e0het
96.2979
98.0731
94.5857
75.5847
1547330415513888133
14.9775
anovak-vgINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
43.8638
34.2213
61.0721
38.4199
1673211390886815
91.9865
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.9214
45.2924
60.8234
54.7022
127015341374885630
71.1864
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3184
96.2571
98.4034
52.4797
41713162254546885782
88.3616
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.8517
89.6171
61.3706
74.5275
13811601406885863
97.5141
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
91.8329
98.7645
85.8105
79.7572
5356675352885251
28.3616
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.8329
98.7645
85.8105
79.7572
5356675352885251
28.3616
asubramanian-gatkSNPti*het
99.0688
98.2225
99.9298
21.0842
125910522786125905588467
7.5792
gduggal-bwafbINDELI1_5*het
98.0966
97.2622
98.9454
56.5385
76877216482849883649
73.4994
gduggal-snapvardSNP*map_l250_m0_e0*
79.3745
93.3489
69.0393
94.3087
1993142196988324
2.7180
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6773
98.9323
98.4237
61.2579
550375945507288234
3.8549
ciseli-customINDELC1_5**
32.7774
40.0000
27.7641
94.8771
46339882161
18.2540
eyeh-varpipeINDELD16_PLUSHG002compoundhet*
28.2801
22.7680
37.3134
28.0307
5331808525882881
99.8866