PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32101-32150 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 99.0228 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | * | hetalt | 86.0203 | 76.2545 | 98.6547 | 50.8811 | 1474 | 459 | 220 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.0000 | 76.2299 | 98.6425 | 50.7795 | 1472 | 459 | 218 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.5663 | 90.4762 | 92.6829 | 99.3598 | 38 | 4 | 38 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7650 | 99.8824 | 99.6479 | 51.0626 | 849 | 1 | 849 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | het | 97.2973 | 97.8261 | 96.7742 | 95.2308 | 90 | 2 | 90 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.7273 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4686 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.0926 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.1095 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.7433 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.7495 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 97.2852 | 94.7392 | 99.9718 | 57.2014 | 10589 | 588 | 10650 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9387 | 96.0088 | 99.9477 | 63.4628 | 5701 | 237 | 5737 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.3969 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6666 | 99.6190 | 99.7143 | 62.5668 | 1046 | 4 | 1047 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 97.9098 | 97.3958 | 98.4293 | 90.7996 | 187 | 5 | 188 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.9564 | 113 | 1 | 113 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.5088 | 326 | 1 | 326 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 84.7216 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4186 | 99.7085 | 99.1304 | 84.9608 | 342 | 1 | 342 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7192 | 97.1591 | 98.2857 | 92.7023 | 171 | 5 | 172 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.0801 | 197 | 1 | 197 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.6501 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.6938 | 94.3396 | 97.0874 | 96.3358 | 100 | 6 | 100 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.9641 | 94.6903 | 97.2727 | 96.6616 | 107 | 6 | 107 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0000 | 94.7368 | 97.2973 | 96.7401 | 108 | 6 | 108 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3835 | 94.9801 | 99.9116 | 43.2609 | 3349 | 177 | 3390 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 72.7124 | 164 | 14 | 164 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.0476 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0651 | 94.4072 | 99.8769 | 35.3752 | 2397 | 142 | 2434 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.0047 | 94.2890 | 99.8816 | 37.0370 | 2493 | 151 | 2530 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3835 | 94.9801 | 99.9116 | 43.2609 | 3349 | 177 | 3390 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9554 | 99.9406 | 99.9703 | 49.4797 | 10096 | 6 | 10096 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.6242 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.9024 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | homalt | 99.0596 | 98.3199 | 99.8105 | 85.5645 | 1580 | 27 | 1580 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | homalt | 99.1074 | 98.3991 | 99.8260 | 86.5878 | 1721 | 28 | 1721 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | homalt | 99.1191 | 98.4199 | 99.8283 | 86.6233 | 1744 | 28 | 1744 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | segdup | homalt | 99.9067 | 99.8534 | 99.9600 | 87.5169 | 7494 | 11 | 7494 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5499 | 99.3263 | 99.7744 | 49.3526 | 1327 | 9 | 1327 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2958 | 98.9474 | 99.6466 | 51.0098 | 846 | 9 | 846 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | homalt | 99.2811 | 98.7952 | 99.7719 | 75.6572 | 1312 | 16 | 1312 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 92.5983 | 189 | 4 | 189 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | * | func_cds | * | 99.4388 | 99.5506 | 99.3274 | 89.6520 | 443 | 2 | 443 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | func_cds | het | 99.0698 | 99.5327 | 98.6111 | 41.4634 | 213 | 1 | 213 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.0700 | 72.7273 | 96.8421 | 89.2290 | 96 | 36 | 92 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7571 | 106 | 3 | 106 | 3 | 1 | 33.3333 | |