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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32051-32100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4929 | 98.3333 | 96.6667 | 95.1561 | 59 | 1 | 87 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.5297 | 98.3333 | 96.7391 | 95.1933 | 59 | 1 | 89 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 61.5224 | 45.4545 | 95.1613 | 80.3175 | 25 | 30 | 59 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 58.8235 | 44.4444 | 86.9565 | 97.3714 | 4 | 5 | 20 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 2.2831 | 1.1628 | 62.5000 | 77.7778 | 1 | 85 | 5 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7673 | 28.5714 | 85.0000 | 56.5217 | 10 | 25 | 17 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 14.8482 | 8.0420 | 96.6292 | 50.2793 | 23 | 263 | 86 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 42.8571 | 0 | 4 | 1 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 52.1739 | 40.0000 | 75.0000 | 63.6364 | 6 | 9 | 9 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | * | 98.6417 | 98.8889 | 98.3957 | 28.6260 | 178 | 2 | 184 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | * | 97.2973 | 100.0000 | 94.7368 | 96.7942 | 24 | 0 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | hetalt | 65.0004 | 49.1071 | 96.1039 | 90.3266 | 55 | 57 | 74 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 46.3980 | 31.1475 | 90.9091 | 61.1765 | 19 | 42 | 30 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 62.0666 | 45.8824 | 95.8904 | 59.6685 | 39 | 46 | 70 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 17.0474 | 9.3664 | 94.7368 | 65.0307 | 34 | 329 | 54 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 9.9792 | 5.2980 | 85.7143 | 70.0000 | 8 | 143 | 18 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | hetalt | 99.9219 | 99.8840 | 99.9599 | 21.9998 | 861 | 1 | 7478 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 84.2105 | 94.1538 | 0 | 0 | 16 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 93.5484 | 0 | 0 | 5 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 25.0000 | 99.9765 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 25.0000 | 99.9194 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.5357 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 100.0000 | 62.5000 | 97.5904 | 7 | 0 | 5 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.0228 | 100.0000 | 98.0645 | 81.3926 | 6 | 0 | 152 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 57.1429 | 92.0455 | 0 | 0 | 4 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.0495 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | hetalt | 99.9052 | 99.8840 | 99.9265 | 25.0046 | 861 | 1 | 4079 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5100 | 99.6190 | 99.4012 | 66.6667 | 523 | 2 | 498 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 72.2222 | 65.0000 | 81.2500 | 99.5143 | 13 | 7 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5802 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 70.5882 | 80.0000 | 99.5336 | 12 | 5 | 12 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5759 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | * | 76.9231 | 100.0000 | 62.5000 | 96.4912 | 4 | 0 | 5 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 99.0228 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||