PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31951-32000 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | * | 71.3781 | 55.8011 | 99.0196 | 94.2286 | 303 | 240 | 303 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | het | 75.6144 | 61.3497 | 98.5222 | 94.8055 | 200 | 126 | 200 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | * | 74.9249 | 60.1205 | 99.4024 | 93.7871 | 499 | 331 | 499 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | * | 75.4526 | 60.7935 | 99.4275 | 94.2638 | 521 | 336 | 521 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | het | 79.6631 | 66.5996 | 99.1018 | 94.7845 | 331 | 166 | 331 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | * | 75.7295 | 61.1494 | 99.4393 | 94.2939 | 532 | 338 | 532 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | homalt | 81.6943 | 69.2244 | 99.6437 | 85.3233 | 839 | 373 | 839 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.3333 | 66.8539 | 97.5410 | 81.8452 | 119 | 59 | 119 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.4466 | 61.5819 | 97.3684 | 83.1111 | 109 | 68 | 111 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 77.8017 | 64.4628 | 98.1013 | 78.1466 | 156 | 86 | 155 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | homalt | 83.7500 | 74.4444 | 95.7143 | 85.5372 | 67 | 23 | 67 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.5326 | 87.8942 | 99.9440 | 58.7524 | 5351 | 737 | 5353 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4429 | 34.1463 | 83.3333 | 97.1246 | 14 | 27 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | homalt | 75.5140 | 60.6673 | 99.9817 | 70.3269 | 16382 | 10621 | 16370 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | homalt | 66.1790 | 49.4619 | 99.9651 | 80.4937 | 8594 | 8781 | 8587 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | homalt | 66.3796 | 49.6863 | 99.9655 | 80.4451 | 8711 | 8821 | 8704 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | homalt | 58.4217 | 41.2756 | 99.9355 | 84.5500 | 4653 | 6620 | 4649 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | homalt | 59.7639 | 42.6276 | 99.9398 | 85.5833 | 4987 | 6712 | 4983 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | homalt | 59.9917 | 42.8596 | 99.9408 | 85.5254 | 5069 | 6758 | 5065 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 57.4827 | 42.0290 | 90.9091 | 96.2199 | 29 | 40 | 30 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9853 | 94.2753 | 99.8558 | 44.2957 | 2075 | 126 | 2077 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.2226 | 34.2857 | 81.2500 | 96.9811 | 12 | 23 | 13 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | homalt | 76.7378 | 62.2661 | 99.9732 | 69.0460 | 11183 | 6777 | 11172 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | homalt | 66.2065 | 49.4975 | 99.9451 | 78.1716 | 5467 | 5578 | 5460 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | homalt | 67.0606 | 50.4578 | 99.9476 | 79.7932 | 5731 | 5627 | 5724 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | homalt | 67.2881 | 50.7157 | 99.9483 | 79.7369 | 5811 | 5647 | 5804 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | homalt | 59.0384 | 41.8998 | 99.9022 | 84.1026 | 3070 | 4257 | 3066 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | homalt | 60.4067 | 43.2904 | 99.9090 | 85.1344 | 3297 | 4319 | 3293 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | homalt | 60.6049 | 43.4941 | 99.9103 | 85.0982 | 3346 | 4347 | 3342 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | segdup | homalt | 98.8821 | 97.8281 | 99.9591 | 88.2036 | 7342 | 163 | 7338 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.1376 | 72.6976 | 99.8506 | 49.3441 | 2005 | 753 | 2005 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 71.4286 | 66.6667 | 76.9231 | 91.9255 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 91.7241 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 71.4286 | 66.6667 | 76.9231 | 93.1217 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 92.9825 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 71.4286 | 66.6667 | 76.9231 | 93.2990 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 93.1818 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 63.6364 | 70.0000 | 92.5373 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 92.6829 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 63.6364 | 70.0000 | 93.5065 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.6170 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 63.6364 | 70.0000 | 93.6306 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 80.0000 | 100.0000 | 66.6667 | 93.7063 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I1_5 | HG002compoundhet | homalt | 91.3175 | 84.8024 | 98.9170 | 47.1374 | 279 | 50 | 274 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.4362 | 95.6140 | 97.2727 | 79.8165 | 109 | 5 | 107 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5126 | 96.0245 | 99.0476 | 76.1905 | 314 | 13 | 312 | 3 | 1 | 33.3333 | |