PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3101-3150 / 86044 show all
anovak-vgINDELD6_15HG002complexvar*
72.7472
67.2954
79.1602
52.2024
356817343582943676
71.6861
qzeng-customSNP*map_l100_m1_e0*
87.6931
79.1127
98.3611
75.8509
572801512356597943784
83.1389
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.7888
53.3686
46.6591
94.6882
80870682494256
5.9448
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1935
96.8999
97.4889
57.0530
36727117536532941927
98.5122
ckim-dragenSNPtimap_l100_m2_e0het
98.1149
99.2554
97.0004
73.1660
303942283039794087
9.2553
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
66.9076
92.2101
52.5013
83.8765
1018861039940100
10.6383
gduggal-bwavardSNPtimap_l150_m0_e0*
92.8160
97.0360
88.9477
85.9871
7628233756594050
5.3192
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
39.3470
36.3683
42.8571
67.0539
7031230705940934
99.3617
jlack-gatkSNP*segduphet
97.2497
99.7806
94.8441
94.7945
1727938172739395
0.5325
egarrison-hhgaSNP**het
99.8773
99.8048
99.9499
18.3927
186993036571869954938124
13.2196
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
31.6999
78.9855
19.8291
89.3462
2185823293821
2.2388
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.9516
98.5298
89.7799
55.6361
82431238240938934
99.5736
eyeh-varpipeSNP*segduphet
97.2199
99.8383
94.7354
91.1282
1728928168619377
0.7471
ltrigg-rtg2INDEL**het
99.3348
99.1568
99.5135
56.1055
1924961637191657937230
24.5464
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
81.4636
75.3003
88.7258
57.0269
758524887374937772
82.3906
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.1971
91.6616
76.1638
51.6125
30012732994937932
99.4664
mlin-fermikitSNPtvmap_l150_m2_e0homalt
60.3616
53.1472
69.8423
60.3244
217019132170937869
92.7428
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
81.9075
85.8815
78.2851
78.2609
3376555337893716
1.7076
ghariani-varprowlINDELD1_5*homalt
93.4710
89.4248
97.9006
50.1151
43752517443695937631
67.3426
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.1915
99.5930
94.9031
45.9580
18109741742893671
7.5855
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
79.2669
90.1745
70.7134
62.8847
19642142260936894
95.5128
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
84.9281
95.2067
76.6525
51.6405
26021313073936904
96.5812
ckim-isaacINDELI1_5HG002compoundhet*
86.4991
81.9764
91.5499
51.1004
10129222710130935794
84.9198
anovak-vgINDELD6_15HG002compoundhethomalt
20.9157
83.3333
11.9586
45.5385
204127935669
71.5508
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
44.8785
34.5273
64.0937
56.3014
58811151669935605
64.7059
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.4713
60.2535
58.7091
58.8203
13318781328934788
84.3683
eyeh-varpipeSNP*map_l125_m1_e0*
98.7938
99.6867
97.9168
73.3897
451851424385393338
4.0729
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50het
95.5503
98.9154
92.4066
58.6255
113091241135493313
1.3934
jpowers-varprowlSNP*map_l125_m2_e1*
97.5993
97.1950
98.0069
76.8922
45878132445878933285
30.5466
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
54.2716
87.3611
39.3624
86.5975
6299160593237
3.9700
ckim-dragenSNPtimap_l100_m1_e0*
98.6835
99.2948
98.0797
66.8879
4759333847601932106
11.3734
gduggal-bwavardSNPtimap_l150_m0_e0het
90.2624
97.3906
84.1064
88.1487
4964133493293244
4.7210
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.7698
26.2547
40.2181
60.9567
6331778627932870
93.3476
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
gduggal-snapvardINDEL*map_l100_m2_e0*
86.0203
89.1958
83.0632
86.5245
32943994561930439
47.2043
jpowers-varprowlSNP*map_l125_m2_e0*
97.5865
97.1834
97.9930
76.8491
45407131645407930284
30.5376
jmaeng-gatkSNPtimap_siren*
94.5677
90.5256
98.9876
65.0046
9084795089083292992
9.9031
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
45.1709
65.4521
34.4852
53.4012
485256489929918
98.8159
gduggal-snapfbINDELD6_15HG002compoundhethomalt
3.3072
70.8333
1.6931
58.2597
17716929928
99.8924
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
8.4568
34.6774
4.8156
99.4220
43814792932
3.4446
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
52.1029
79.6221
38.7203
60.5927
590151587929868
93.4338
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9007
77.8470
90.9754
41.3740
862724559355928916
98.7069
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
65.8825
97.2660
49.8107
91.6259
9252692192861
6.5733
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2376
96.9527
97.5243
55.9478
36747115536556928901
97.0905
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
gduggal-snapvardINDELC6_15**
51.3896
100.0000
34.5801
85.2457
70490927158
17.0442
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192