PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31101-31150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 90.3846 | 88.6792 | 92.1569 | 94.4565 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 86.6667 | 86.6667 | 86.6667 | 95.1378 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.7143 | 89 | 1 | 89 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4555 | 99.2754 | 99.6364 | 86.7438 | 1096 | 8 | 1096 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3046 | 99.1667 | 99.4429 | 87.9933 | 714 | 6 | 714 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3367 | 78.3784 | 93.6508 | 78.1250 | 58 | 16 | 59 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 60.4651 | 50.0000 | 76.4706 | 81.9149 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 70.5882 | 66.6667 | 75.0000 | 79.7468 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 60.4651 | 50.0000 | 76.4706 | 84.8214 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 70.5882 | 66.6667 | 75.0000 | 82.9787 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 60.4651 | 50.0000 | 76.4706 | 84.9558 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 70.5882 | 66.6667 | 75.0000 | 83.1579 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2672 | 54.2857 | 81.8182 | 88.5417 | 19 | 16 | 18 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 65.4545 | 54.5455 | 81.8182 | 90.6780 | 18 | 15 | 18 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | * | 58.3333 | 53.8462 | 63.6364 | 54.1667 | 7 | 6 | 7 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | het | 70.5882 | 85.7143 | 60.0000 | 52.3810 | 6 | 1 | 6 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8485 | 93.3333 | 77.7778 | 96.5583 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.1390 | 6 | 0 | 6 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | * | 96.5116 | 97.6471 | 95.4023 | 51.1236 | 83 | 2 | 83 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.4706 | 76.4706 | 76.4706 | 97.8454 | 13 | 4 | 13 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.7672 | 93.7824 | 97.8378 | 95.4944 | 181 | 12 | 181 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | segdup | het | 96.2162 | 96.7391 | 95.6989 | 95.1461 | 89 | 3 | 89 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 88.1279 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7080 | 98.4536 | 98.9637 | 75.6774 | 382 | 6 | 382 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2107 | 98.8095 | 97.6190 | 78.5987 | 166 | 2 | 164 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | * | hetalt | 96.4303 | 93.1398 | 99.9619 | 60.7048 | 10427 | 768 | 10489 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | hetalt | 97.6373 | 95.5968 | 99.7669 | 69.6337 | 1650 | 76 | 1712 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1077 | 97.3988 | 98.8270 | 68.8300 | 337 | 9 | 337 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.2003 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5235 | 99.4286 | 99.6187 | 61.7293 | 1044 | 6 | 1045 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.2054 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 95.9350 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.2265 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.0392 | 97.1503 | 98.9446 | 91.0613 | 375 | 11 | 375 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.9964 | 97.4638 | 98.5348 | 91.1104 | 269 | 7 | 269 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.3868 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6304 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.5019 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8570 | 99.8412 | 99.8729 | 71.3127 | 3143 | 5 | 3143 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.3685 | 98.9708 | 99.7695 | 86.1400 | 1731 | 18 | 1731 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.3768 | 98.9842 | 99.7725 | 86.1825 | 1754 | 18 | 1754 | 4 | 3 | 75.0000 | |