PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31051-31100 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.9472 | 80.1980 | 94.9367 | 93.2536 | 81 | 20 | 75 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | homalt | 99.6262 | 99.5022 | 99.7505 | 86.3540 | 1599 | 8 | 1599 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.0368 | 87.2727 | 97.3510 | 88.2490 | 144 | 21 | 147 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0642 | 87.9032 | 96.6387 | 87.3539 | 109 | 15 | 115 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3600 | 99.0514 | 99.6705 | 83.4424 | 1253 | 12 | 1210 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2318 | 98.9924 | 99.4723 | 85.2271 | 786 | 8 | 754 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | homalt | 99.8377 | 99.7440 | 99.9316 | 65.7995 | 5845 | 15 | 5846 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | homalt | 99.8420 | 99.7507 | 99.9334 | 68.3459 | 6002 | 15 | 6003 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | homalt | 98.5147 | 97.8389 | 99.2000 | 76.5368 | 498 | 11 | 496 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | homalt | 98.6835 | 97.7180 | 99.6683 | 77.1071 | 1199 | 28 | 1202 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | homalt | 98.6382 | 97.6209 | 99.6769 | 78.6515 | 1231 | 30 | 1234 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | homalt | 98.6597 | 97.6581 | 99.6820 | 78.7966 | 1251 | 30 | 1254 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | homalt | 98.8303 | 98.1912 | 99.4778 | 81.6483 | 760 | 14 | 762 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1367 | 0 | 0 | 22 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 94.2029 | 89.5928 | 0 | 0 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.8788 | 88.4211 | 0 | 0 | 29 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 95.1737 | 0 | 0 | 21 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 96.5612 | 0 | 0 | 21 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 95.6647 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.7895 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 95.3728 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.8874 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.9227 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | homalt | 92.9577 | 97.0588 | 89.1892 | 94.0419 | 33 | 1 | 33 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.4161 | 95.5385 | 99.3691 | 21.9212 | 621 | 29 | 630 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8504 | 96.8504 | 96.8504 | 78.9037 | 123 | 4 | 123 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4785 | 99.4206 | 99.5365 | 64.1313 | 858 | 5 | 859 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 50.8083 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4310 | 99.4310 | 99.4310 | 47.4196 | 699 | 4 | 699 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 91.7916 | 100 | 3 | 100 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 93.1522 | 59 | 1 | 59 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2967 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 87.8505 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | * | hetalt | 95.4538 | 91.3354 | 99.9611 | 60.3706 | 10225 | 970 | 10283 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 91.9469 | 85.2839 | 99.7392 | 69.0289 | 1472 | 254 | 1530 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.5147 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I6_15 | HG002complexvar | het | 99.1867 | 98.5563 | 99.8253 | 59.8421 | 2321 | 34 | 2285 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0711 | 93.2886 | 96.9231 | 77.9661 | 139 | 10 | 126 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 90.3846 | 88.6792 | 92.1569 | 93.5361 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 90.3846 | 88.6792 | 92.1569 | 94.3080 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |