PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31001-31050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 90.1099 | 89.1304 | 91.1111 | 97.6923 | 41 | 5 | 41 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | * | 85.3659 | 81.3953 | 89.7436 | 54.6512 | 35 | 8 | 35 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | het | 90.0000 | 93.1034 | 87.0968 | 53.0303 | 27 | 2 | 27 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | * | 94.3636 | 90.4918 | 98.5816 | 93.0781 | 276 | 29 | 278 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | * | 94.8253 | 91.2387 | 98.7055 | 93.5812 | 302 | 29 | 305 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | * | 94.8576 | 91.2913 | 98.7138 | 93.7286 | 304 | 29 | 307 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.5000 | 88.7324 | 0 | 0 | 28 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.3844 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.3844 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6087 | 95.6023 | 0 | 0 | 19 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 93.9394 | 95.6117 | 0 | 0 | 62 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | het | 98.8701 | 100.0000 | 97.7654 | 93.0539 | 7 | 0 | 175 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 73.6842 | 87.5000 | 63.6364 | 59.2593 | 7 | 1 | 7 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2737 | 91.9271 | 98.8732 | 77.2144 | 353 | 31 | 351 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.6072 | 95.6801 | 99.6135 | 53.2309 | 1041 | 47 | 1031 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2734 | 78.1321 | 98.8372 | 30.2231 | 343 | 96 | 340 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.8866 | 95.1220 | 98.7179 | 46.1140 | 312 | 16 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002complexvar | homalt | 99.5497 | 99.1413 | 99.9615 | 53.6591 | 10507 | 91 | 10381 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4520 | 98.9651 | 99.9438 | 27.8836 | 7172 | 75 | 7111 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.5529 | 87.3239 | 94.0299 | 48.4615 | 62 | 9 | 63 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | het | 96.5285 | 93.8017 | 99.4186 | 74.9818 | 681 | 45 | 684 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | het | 96.7059 | 94.1099 | 99.4490 | 76.6409 | 719 | 45 | 722 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0970 | 98.4127 | 99.7908 | 31.1983 | 1922 | 31 | 1908 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.7858 | 86.9565 | 97.1831 | 21.9780 | 140 | 21 | 138 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 82.5034 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 85.2043 | 75.0733 | 98.4962 | 64.0541 | 256 | 85 | 262 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | * | 80.7947 | 70.9302 | 93.8462 | 71.6157 | 61 | 25 | 61 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.6243 | 90.3481 | 99.3255 | 49.4027 | 571 | 61 | 589 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2313 | 98.7627 | 99.7044 | 62.6862 | 1357 | 17 | 1349 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7133 | 97.7896 | 99.6546 | 56.8394 | 1106 | 25 | 1154 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1596 | 94.9559 | 99.4681 | 76.3893 | 753 | 40 | 748 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3504 | 99.4444 | 99.2565 | 81.6068 | 537 | 3 | 534 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | het | 96.3546 | 93.7008 | 99.1632 | 79.0901 | 476 | 32 | 474 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9777 | 99.1254 | 98.8304 | 84.3764 | 340 | 3 | 338 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | homalt | 99.5850 | 99.5050 | 99.6653 | 76.7645 | 1206 | 6 | 1191 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | hetalt | 95.3064 | 91.3328 | 99.6416 | 58.0293 | 1117 | 106 | 1112 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2332 | 97.3361 | 99.1471 | 75.0399 | 475 | 13 | 465 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7867 | 78.5714 | 89.7436 | 95.4064 | 33 | 9 | 35 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.0526 | 77.7778 | 84.6154 | 96.1310 | 21 | 6 | 22 | 4 | 1 | 25.0000 | |