PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3051-3100 / 86044 show all
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3394
98.7572
97.9251
69.6626
451345684554496545
4.6632
gduggal-snapplatSNP*map_l125_m0_e0het
91.0262
89.8926
92.1888
87.3834
11384128011389965535
55.4404
eyeh-varpipeSNP*map_l125_m2_e0*
98.7944
99.6939
97.9109
74.9243
465801434522796538
3.9378
gduggal-bwavardSNPtvmap_l125_m0_e0het
89.1615
98.1141
81.7062
85.2941
431883431096530
3.1088
mlin-fermikitSNPtvmap_l150_m1_e0*
56.0020
42.3295
82.7209
62.1223
461962934615964841
87.2407
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.6329
89.7120
95.7505
61.0009
14423165421721964836
86.7220
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.6329
89.7120
95.7505
61.0009
14423165421721964836
86.7220
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
48.9231
45.1335
53.4074
60.1656
99712121105964732
75.9336
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.0066
99.5228
94.6144
77.5514
168948116918963436
45.2752
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.0066
99.5228
94.6144
77.5514
168948116918963436
45.2752
ckim-dragenSNPtimap_l100_m2_e0*
98.6738
99.2954
98.0599
68.9474
4861634548624962107
11.1227
qzeng-customINDELI1_5HG002compoundhet*
82.4804
75.6151
90.7168
64.6037
934330139391961822
85.5359
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
84.5297
95.6092
75.7515
51.0570
26131202999960935
97.3958
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
46.2389
95.1945
30.5355
26.2146
41621422960895
93.2292
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
49.8749
48.6428
51.1711
72.7940
8969461005959462
48.1752
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
95.7239
96.8194
94.6529
42.8294
1007633116976959707
73.7226
eyeh-varpipeINDELI1_5HG002complexvar*
95.9629
94.9405
97.0075
49.9241
31675168831023957917
95.8203
gduggal-bwafbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.1730
94.0088
98.4392
67.8764
45379289260357957752
78.5789
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
37.8203
79.7927
24.7836
90.1732
3087831595627
2.8243
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
52.7266
38.0507
85.8309
70.4516
610699415785955426
44.6073
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.6423
87.1021
73.3594
90.7618
2627389262795423
2.4109
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
60.5053
81.8731
47.9826
72.9778
542120880954458
48.0084
eyeh-varpipeSNP*map_l125_m2_e1het
98.1785
99.6221
96.7760
76.7928
295281122860795328
2.9381
jpowers-varprowlSNPtvHG002complexvarhomalt
99.4724
99.9411
99.0081
25.6082
950555695130953743
77.9643
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6510
98.5407
96.7772
70.9827
282934192861895337
3.8825
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6510
98.5407
96.7772
70.9827
282934192861895337
3.8825
mlin-fermikitSNPtvmap_l150_m2_e1homalt
60.4772
53.3382
69.8227
60.3864
220519292205953885
92.8646
eyeh-varpipeSNP*segdup*
98.2314
99.8753
96.6407
90.4939
28032352738795222
2.3109
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.8912
73.6757
97.3956
82.4238
355641270735564951276
29.0221
gduggal-snapfbSNPtilowcmp_SimpleRepeat_quadTR_51to200*
15.1142
85.1485
8.2932
83.7435
86158695114
1.4721
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
61.8951
85.0543
48.6486
86.3559
93916590095047
4.9474
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5916
75.6355
56.3620
56.7025
12203931227950942
99.1579
jlack-gatkSNP*segdup*
98.2374
99.8040
96.7192
93.4608
28012552800695016
1.6842
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.0471
96.0902
74.6866
62.8554
1278522800949275
28.9779
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
27.2634
21.9826
35.8835
56.2500
5301881530947929
98.0993
ckim-dragenSNPtimap_l100_m2_e1het
98.1227
99.2603
97.0108
73.2091
307312293073494788
9.2925
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
83.1927
97.3270
72.6431
60.4890
24766825129469
0.9514
eyeh-varpipeSNP*map_l125_m2_e0het
98.1728
99.6214
96.7658
76.7357
292071112830494628
2.9598
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
91.0653
90.2147
91.9320
48.7934
10713116210768945395
41.7989
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.7441
38.0238
43.8836
68.6231
7351198739945935
98.9418
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3188
98.0964
98.5422
67.5554
64107124463878945830
87.8307
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3188
98.0964
98.5422
67.5554
64107124463878945830
87.8307
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
egarrison-hhgaINDEL*HG002complexvarhet
97.6548
97.3665
97.9448
54.4695
44995121744989944675
71.5042
gduggal-snapvardINDEL*map_l100_m2_e1*
85.8099
88.8445
82.9757
86.6598
33374194601944443
46.9280
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.5282
97.7986
91.4694
41.2757
1012922810122944934
98.9407
ckim-dragenINDELI1_5**
99.2774
99.1830
99.3720
58.7161
1494331231149372944540
57.2034