PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30901-30950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.4783 | 95.5556 | 91.4894 | 52.5253 | 43 | 2 | 43 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.9836 | 17 | 2 | 18 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 93.1949 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 78.4355 | 65.1515 | 98.5240 | 37.7011 | 301 | 161 | 267 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 95.4545 | 94.5946 | 96.3303 | 94.9373 | 105 | 6 | 105 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 96.7033 | 95.6522 | 97.7778 | 95.0685 | 176 | 8 | 176 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 95.8333 | 95.0413 | 96.6387 | 95.1009 | 115 | 6 | 115 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 96.7213 | 95.6757 | 97.7901 | 95.1552 | 177 | 8 | 177 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 95.1515 | 116 | 6 | 116 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.6887 | 98.6486 | 94.8052 | 81.8396 | 73 | 1 | 73 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.9466 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.6471 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.7480 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 73.3333 | 0 | 0 | 0 | 4 | 3 | 75.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.6866 | 53.8462 | 75.0000 | 63.6364 | 7 | 6 | 12 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 52.1739 | 42.8571 | 66.6667 | 97.6654 | 3 | 4 | 8 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 59.4595 | 50.0000 | 73.3333 | 97.3022 | 4 | 4 | 11 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 59.4595 | 50.0000 | 73.3333 | 97.3684 | 4 | 4 | 11 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | homalt | 69.0753 | 53.1002 | 98.7988 | 95.2759 | 334 | 295 | 329 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | ti | * | hetalt | 98.0808 | 96.9072 | 99.2832 | 55.8893 | 564 | 18 | 554 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5105 | 99.3794 | 99.6419 | 52.1832 | 1121 | 7 | 1113 | 4 | 2 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4125 | 98.9911 | 99.8375 | 43.7900 | 2453 | 25 | 2458 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3290 | 99.4275 | 99.2308 | 69.0660 | 521 | 3 | 516 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 76.9231 | 83.3333 | 97.2758 | 20 | 6 | 20 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.7273 | 70.5882 | 75.0000 | 97.7654 | 12 | 5 | 12 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.0368 | 92.3975 | 99.9745 | 38.5038 | 15435 | 1270 | 15656 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0368 | 92.3975 | 99.9745 | 38.5038 | 15435 | 1270 | 15656 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.6732 | 97.8316 | 99.5294 | 30.3849 | 767 | 17 | 846 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8591 | 94.8571 | 98.9474 | 33.0986 | 332 | 18 | 376 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 90.3408 | 89.5833 | 91.1111 | 94.6492 | 43 | 5 | 41 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.9254 | 90.1961 | 91.6667 | 94.4380 | 46 | 5 | 44 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7293 | 99.8915 | 99.5676 | 76.0425 | 921 | 1 | 921 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 99.9727 | 99.8911 | 50.1493 | 3665 | 1 | 3668 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7544 | 99.6076 | 99.9016 | 41.9475 | 4061 | 16 | 4062 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 93.6170 | 95.6522 | 91.6667 | 97.1049 | 44 | 2 | 44 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.9543 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | segdup | * | 99.5918 | 99.5467 | 99.6370 | 94.3313 | 1098 | 5 | 1098 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7080 | 99.4792 | 97.9487 | 44.6023 | 191 | 1 | 191 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 88.2022 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |