PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30201-30250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | het | 91.7507 | 86.6667 | 97.4684 | 83.5588 | 117 | 18 | 154 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.0050 | 89.8734 | 98.5348 | 73.8506 | 284 | 32 | 269 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2284 | 93.8650 | 98.7138 | 84.8956 | 306 | 20 | 307 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.8648 | 208 | 0 | 208 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | * | 97.0470 | 95.4839 | 98.6622 | 88.2791 | 296 | 14 | 295 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7835 | 99.5098 | 98.0676 | 89.3683 | 203 | 1 | 203 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | homalt | 99.3671 | 99.5772 | 99.1579 | 92.9136 | 471 | 2 | 471 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4747 | 72.9412 | 89.7436 | 60.2041 | 62 | 23 | 35 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0010 | 80.6452 | 94.4444 | 79.8319 | 50 | 12 | 68 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 60.7839 | 44.6237 | 95.2941 | 48.1707 | 83 | 103 | 81 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.3103 | 37.1429 | 73.3333 | 75.4098 | 13 | 22 | 11 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9425 | 91.5612 | 94.3662 | 39.3162 | 217 | 20 | 67 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 71.4286 | 94.2149 | 0 | 0 | 10 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 70.5882 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 95.3488 | 0 | 0 | 2 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 82.6087 | 96.5465 | 0 | 0 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 73.3333 | 92.1466 | 0 | 0 | 11 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 78.9474 | 92.6357 | 0 | 0 | 15 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 84.0000 | 89.1775 | 0 | 0 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 28.2828 | 18.1818 | 63.6364 | 88.8889 | 2 | 9 | 7 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1212 | 1.5945 | 73.3333 | 80.5195 | 7 | 432 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | het | 99.2846 | 99.1329 | 99.4366 | 93.3025 | 686 | 6 | 706 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.9476 | 40.5405 | 90.2439 | 86.2416 | 15 | 22 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | homalt | 81.0811 | 83.3333 | 78.9474 | 93.0909 | 10 | 2 | 15 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | * | 90.3114 | 90.6250 | 90.0000 | 92.9577 | 29 | 3 | 36 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 93.9130 | 7 | 0 | 10 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 89.6163 | 39 | 0 | 42 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 60.0000 | 50.0000 | 75.0000 | 60.0000 | 2 | 2 | 12 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | * | 64.1368 | 51.0638 | 86.2069 | 84.3243 | 24 | 23 | 25 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | het | 53.1401 | 41.6667 | 73.3333 | 84.5361 | 10 | 14 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 62.8497 | 47.7273 | 92.0000 | 89.9194 | 21 | 23 | 46 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 62.8863 | 47.7273 | 92.1569 | 90.4315 | 21 | 23 | 47 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 61.9926 | 46.6667 | 92.3077 | 90.4936 | 21 | 24 | 48 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7334 | 99.1228 | 98.3471 | 87.3629 | 113 | 1 | 238 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | het | 96.4637 | 96.6667 | 96.2617 | 94.0884 | 58 | 2 | 103 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | * | 80.7128 | 73.3333 | 89.7436 | 84.6457 | 11 | 4 | 35 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.3636 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | het | 70.0000 | 60.0000 | 84.0000 | 86.8421 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |