PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29951-30000 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 96.3964 | 96.3964 | 96.3964 | 95.2625 | 107 | 4 | 107 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2826 | 96.7568 | 97.8142 | 95.4658 | 179 | 6 | 179 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 95.4647 | 118 | 4 | 118 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 68.1056 | 52.0548 | 98.4674 | 26.8908 | 304 | 280 | 257 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 96.2238 | 98.3333 | 94.2029 | 88.3051 | 59 | 1 | 65 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0965 | 85.1064 | 91.3043 | 75.1351 | 40 | 7 | 42 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.8079 | 86.9048 | 97.2973 | 76.0905 | 146 | 22 | 144 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 91.5323 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.4051 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6277 | 95.1220 | 98.1818 | 88.6246 | 234 | 12 | 216 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0888 | 95.0000 | 97.2028 | 90.0070 | 152 | 8 | 139 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | * | hetalt | 97.2805 | 94.7387 | 99.9625 | 62.4322 | 10606 | 589 | 10669 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 98.0896 | 96.4658 | 99.7691 | 70.7729 | 1665 | 61 | 1728 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.5541 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6608 | 99.4733 | 99.8491 | 69.8452 | 2644 | 14 | 2646 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 98.4653 | 98.1595 | 98.7730 | 87.5096 | 320 | 6 | 322 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 81.0762 | 207 | 1 | 207 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 97.9843 | 97.3244 | 98.6532 | 90.9589 | 291 | 8 | 293 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 98.0992 | 97.4763 | 98.7302 | 91.7883 | 309 | 8 | 311 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | * | hetalt | 96.6039 | 93.4744 | 99.9502 | 38.7907 | 7993 | 558 | 8034 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0618 | 95.9514 | 98.1982 | 81.3445 | 237 | 10 | 218 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1286 | 95.3020 | 96.9697 | 78.0731 | 142 | 7 | 128 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0861 | 98.4860 | 99.6935 | 62.3159 | 1301 | 20 | 1301 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.4380 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.7552 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.6652 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7788 | 99.5931 | 99.9652 | 63.6860 | 11505 | 47 | 11505 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5922 | 99.5471 | 99.6374 | 86.6820 | 1099 | 5 | 1099 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.5839 | 99.7222 | 99.4460 | 87.8981 | 718 | 2 | 718 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7788 | 99.5931 | 99.9652 | 63.6860 | 11505 | 47 | 11505 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8552 | 99.7933 | 99.9172 | 69.3872 | 4827 | 10 | 4827 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8411 | 99.8094 | 99.8729 | 71.5397 | 3142 | 6 | 3142 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9282 | 99.9202 | 99.9362 | 44.6182 | 6263 | 5 | 6263 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8385 | 99.8386 | 99.8385 | 31.8944 | 2474 | 4 | 2473 | 4 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9009 | 99.8415 | 99.9603 | 61.7282 | 10081 | 16 | 10081 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5758 | 97.5758 | 97.5758 | 91.1812 | 161 | 4 | 161 | 4 | 2 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1888 | 97.5806 | 96.8000 | 90.9157 | 121 | 3 | 121 | 4 | 2 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9073 | 99.8718 | 99.9429 | 60.7832 | 7010 | 9 | 7006 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.8830 | 98.2477 | 99.5266 | 85.6901 | 841 | 15 | 841 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.9259 | 98.2924 | 99.5676 | 86.6638 | 921 | 16 | 921 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.9362 | 98.3087 | 99.5717 | 86.7386 | 930 | 16 | 930 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.0387 | 84.9785 | 98.0296 | 74.3687 | 198 | 35 | 199 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 76.1905 | 88.8889 | 66.6667 | 85.8824 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 59.2593 | 53.3333 | 66.6667 | 88.9908 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 76.1905 | 88.8889 | 66.6667 | 87.5000 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |