PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2951-3000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | het | 97.4111 | 98.0685 | 96.7625 | 68.1401 | 30362 | 598 | 30366 | 1016 | 436 | 42.9134 | |
| anovak-vg | SNP | tv | HG002complexvar | homalt | 98.3199 | 97.7479 | 98.8987 | 22.7520 | 92969 | 2142 | 91242 | 1016 | 768 | 75.5906 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 63.5187 | 93.8508 | 48.0041 | 71.9172 | 931 | 61 | 938 | 1016 | 8 | 0.7874 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9901 | 97.8124 | 98.1685 | 60.1939 | 54414 | 1217 | 54457 | 1016 | 736 | 72.4409 | |
| qzeng-custom | INDEL | I16_PLUS | * | * | 83.4199 | 82.9387 | 83.9068 | 61.2425 | 5289 | 1088 | 5292 | 1015 | 362 | 35.6650 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | het | 97.7148 | 98.9469 | 96.5131 | 76.8910 | 28093 | 299 | 28094 | 1015 | 88 | 8.6700 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | * | 74.6372 | 70.9355 | 78.7466 | 57.5873 | 3761 | 1541 | 3757 | 1014 | 966 | 95.2663 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | * | 57.3730 | 43.7750 | 83.2258 | 66.7620 | 5035 | 6467 | 5031 | 1014 | 885 | 87.2781 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | het | 97.3939 | 98.0537 | 96.7430 | 68.0809 | 30026 | 596 | 30030 | 1011 | 436 | 43.1256 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | het | 97.0530 | 98.7692 | 95.3955 | 77.5266 | 20944 | 261 | 20946 | 1011 | 206 | 20.3759 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.8228 | 58.1169 | 61.6319 | 75.6941 | 1253 | 903 | 1624 | 1011 | 502 | 49.6538 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| ghariani-varprowl | SNP | ti | HG002complexvar | homalt | 99.7133 | 99.9473 | 99.4805 | 19.5938 | 193359 | 102 | 193405 | 1010 | 705 | 69.8020 | |
| bgallagher-sentieon | INDEL | * | * | het | 99.5620 | 99.6441 | 99.4801 | 60.4341 | 193442 | 691 | 193072 | 1009 | 623 | 61.7443 | |
| ckim-vqsr | SNP | ti | * | * | 99.3455 | 98.7474 | 99.9510 | 21.8102 | 2059387 | 26124 | 2059330 | 1009 | 89 | 8.8206 | |
| jlack-gatk | INDEL | * | HG002compoundhet | het | 87.1214 | 97.4108 | 78.7981 | 78.1044 | 3988 | 106 | 3750 | 1009 | 902 | 89.3954 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | * | 95.3999 | 98.4093 | 92.5691 | 82.2522 | 12559 | 203 | 12557 | 1008 | 96 | 9.5238 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.2113 | 82.3308 | 65.9106 | 63.8478 | 1752 | 376 | 1947 | 1007 | 294 | 29.1956 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | * | 90.8863 | 84.3874 | 98.4697 | 61.0933 | 64926 | 12012 | 64799 | 1007 | 684 | 67.9245 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5298 | 97.9511 | 80.7619 | 65.1199 | 4207 | 88 | 4219 | 1005 | 39 | 3.8806 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.7795 | 99.2361 | 58.7171 | 69.2191 | 1429 | 11 | 1428 | 1004 | 7 | 0.6972 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.7154 | 88.6381 | 90.8193 | 44.6755 | 5968 | 765 | 9932 | 1004 | 991 | 98.7052 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | het | 97.3515 | 98.0162 | 96.6958 | 65.8783 | 29348 | 594 | 29352 | 1003 | 436 | 43.4696 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.3679 | 93.1480 | 77.1005 | 68.0245 | 3317 | 244 | 3377 | 1003 | 177 | 17.6471 | |
| mlin-fermikit | INDEL | I1_5 | * | homalt | 98.3593 | 98.3799 | 98.3387 | 50.5872 | 59449 | 979 | 59371 | 1003 | 989 | 98.6042 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 82.4109 | 89.4163 | 76.4235 | 49.0835 | 3278 | 388 | 3248 | 1002 | 864 | 86.2275 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 39.8947 | 28.8609 | 64.5870 | 56.5465 | 1994 | 4915 | 1822 | 999 | 788 | 78.8789 | |
| ghariani-varprowl | SNP | * | segdup | het | 96.9575 | 99.5207 | 94.5230 | 93.2841 | 17234 | 83 | 17241 | 999 | 5 | 0.5005 | |
| dgrover-gatk | SNP | ti | * | het | 99.9394 | 99.9568 | 99.9221 | 18.8587 | 1281337 | 554 | 1281283 | 999 | 87 | 8.7087 | |
| ltrigg-rtg1 | INDEL | * | * | * | 99.0160 | 98.3355 | 99.7061 | 56.0561 | 338806 | 5735 | 338554 | 998 | 454 | 45.4910 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.7870 | 50.7723 | 64.4183 | 57.0048 | 1808 | 1753 | 1805 | 997 | 979 | 98.1946 | |
| anovak-vg | INDEL | I1_5 | map_siren | homalt | 68.1692 | 93.3993 | 53.6710 | 71.9974 | 1132 | 80 | 1155 | 997 | 947 | 94.9850 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.4822 | 58.5761 | 69.2853 | 62.7923 | 2131 | 1507 | 2249 | 997 | 694 | 69.6088 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | het | 93.6780 | 98.7414 | 89.1086 | 85.4382 | 8159 | 104 | 8157 | 997 | 87 | 8.7262 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | het | 96.8491 | 98.7368 | 95.0321 | 81.8341 | 19072 | 244 | 19072 | 997 | 197 | 19.7593 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 63.1329 | 71.2580 | 56.6710 | 76.9439 | 895 | 361 | 1304 | 997 | 490 | 49.1474 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | * | 57.2030 | 43.5755 | 83.2323 | 66.6536 | 4948 | 6407 | 4944 | 996 | 869 | 87.2490 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 77.5015 | 89.8990 | 68.1090 | 63.2249 | 1958 | 220 | 2125 | 995 | 950 | 95.4774 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 71.3875 | 89.5226 | 59.3622 | 63.3723 | 1444 | 169 | 1452 | 994 | 947 | 95.2716 | |
| gduggal-bwafb | INDEL | I6_15 | * | * | 87.8626 | 81.3399 | 95.5225 | 40.4474 | 20191 | 4632 | 21206 | 994 | 970 | 97.5855 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3816 | 98.0381 | 96.7339 | 73.7893 | 29882 | 598 | 29440 | 994 | 753 | 75.7545 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3816 | 98.0381 | 96.7339 | 73.7893 | 29882 | 598 | 29440 | 994 | 753 | 75.7545 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | het | 4.7472 | 34.0426 | 2.5515 | 55.6957 | 16 | 31 | 26 | 993 | 986 | 99.2951 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | homalt | 83.8960 | 77.5134 | 91.4241 | 57.4270 | 10424 | 3024 | 10586 | 993 | 140 | 14.0987 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 65.1903 | 73.6735 | 58.4590 | 47.5626 | 361 | 129 | 1396 | 992 | 627 | 63.2056 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.3730 | 59.4553 | 70.1776 | 54.1149 | 2336 | 1593 | 2332 | 991 | 976 | 98.4864 | |