PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29551-29600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2739 | 96.9720 | 99.6112 | 61.8511 | 1281 | 40 | 1281 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 94.6903 | 93.8596 | 95.5357 | 89.8274 | 107 | 7 | 107 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7826 | 93.9655 | 95.6140 | 90.8581 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.2405 | 95.8549 | 98.6667 | 91.0990 | 370 | 16 | 370 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0696 | 96.0145 | 98.1481 | 91.0979 | 265 | 11 | 265 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | * | hetalt | 98.5307 | 97.9381 | 99.1304 | 54.1467 | 570 | 12 | 570 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | ti | HG002compoundhet | homalt | 99.4701 | 99.0127 | 99.9317 | 30.6381 | 7321 | 73 | 7321 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8563 | 99.7624 | 99.9504 | 49.5168 | 10078 | 24 | 10078 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.7933 | 99.8965 | 69.7243 | 4827 | 10 | 4827 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8093 | 99.7776 | 99.8411 | 72.0082 | 3141 | 7 | 3141 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7660 | 99.6556 | 99.8767 | 49.4516 | 4051 | 14 | 4051 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.7273 | 75.0000 | 70.5882 | 76.0563 | 12 | 4 | 12 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | * | 76.3282 | 68.0851 | 86.8421 | 91.3832 | 32 | 15 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 94.7674 | 92.6136 | 97.0238 | 92.2616 | 163 | 13 | 163 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | * | 81.4815 | 76.7442 | 86.8421 | 33.3333 | 33 | 10 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.0714 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | * | 53.6585 | 44.0000 | 68.7500 | 94.2029 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 57.1429 | 53.3333 | 61.5385 | 94.3723 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 53.6585 | 44.0000 | 68.7500 | 95.0156 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | SNP | tv | func_cds | homalt | 99.8535 | 100.0000 | 99.7074 | 29.3802 | 1704 | 0 | 1704 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6234 | 99.7183 | 99.5287 | 62.3224 | 1062 | 3 | 1056 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.0979 | 90.1961 | 90.0000 | 90.0398 | 46 | 5 | 45 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0890 | 98.6667 | 99.5150 | 57.5021 | 1036 | 14 | 1026 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | het | 97.1585 | 95.0617 | 99.3498 | 76.6474 | 770 | 40 | 764 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.0396 | 93.8710 | 98.3108 | 82.6495 | 291 | 19 | 291 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8646 | 94.8617 | 98.9540 | 85.0251 | 480 | 26 | 473 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8435 | 94.7977 | 98.9796 | 86.8102 | 492 | 27 | 485 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | * | 96.9175 | 94.9153 | 99.0060 | 86.8531 | 504 | 27 | 498 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7291 | 96.2264 | 99.2795 | 65.1606 | 714 | 28 | 689 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 63.0742 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3346 | 95.0228 | 99.7616 | 43.5987 | 2081 | 109 | 2092 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0671 | 97.7492 | 98.3871 | 63.8273 | 304 | 7 | 305 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5843 | 82.5175 | 95.6140 | 92.1971 | 118 | 25 | 109 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m0_e0 | het | 94.1134 | 89.1766 | 99.6288 | 83.4358 | 1343 | 163 | 1342 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | homalt | 99.6340 | 99.4722 | 99.7963 | 86.3079 | 2450 | 13 | 2450 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8948 | 98.2790 | 99.5183 | 82.2625 | 1085 | 19 | 1033 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2905 | 99.3056 | 99.2754 | 83.8445 | 715 | 5 | 685 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | homalt | 99.6280 | 99.5426 | 99.7136 | 87.3322 | 1741 | 8 | 1741 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | het | 96.2660 | 93.0610 | 99.6997 | 76.8718 | 1663 | 124 | 1660 | 5 | 2 | 40.0000 | |