PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29101-29150 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8071 | 96.3738 | 99.2837 | 81.2818 | 691 | 26 | 693 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8741 | 96.4613 | 99.3289 | 82.5609 | 736 | 27 | 740 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8495 | 96.4010 | 99.3421 | 82.5287 | 750 | 28 | 755 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0315 | 94.1860 | 97.9508 | 80.5112 | 243 | 15 | 239 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1200 | 94.3182 | 97.9920 | 81.1364 | 249 | 15 | 244 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.0828 | 94.1818 | 98.0620 | 81.0294 | 259 | 16 | 253 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.8670 | 86.0825 | 98.4848 | 65.2997 | 334 | 54 | 325 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | * | 81.8182 | 73.2558 | 92.6471 | 71.7842 | 63 | 23 | 63 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.0116 | 93.0380 | 99.1817 | 48.3080 | 588 | 44 | 606 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1258 | 98.3867 | 99.8761 | 42.1136 | 3964 | 65 | 4032 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4887 | 99.3450 | 99.6329 | 63.1294 | 1365 | 9 | 1357 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.2781 | 95.6790 | 98.9316 | 78.1818 | 465 | 21 | 463 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.2343 | 95.5734 | 98.9540 | 80.5770 | 475 | 22 | 473 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 61.5809 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0671 | 97.7492 | 98.3871 | 62.2871 | 304 | 7 | 305 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9164 | 96.9262 | 98.9270 | 73.8349 | 473 | 15 | 461 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | homalt | 99.6639 | 99.4041 | 99.9251 | 65.7800 | 6672 | 40 | 6672 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | homalt | 99.5584 | 99.2419 | 99.8769 | 71.8698 | 4058 | 31 | 4057 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 89.1304 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 87.1795 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 58.3333 | 88.4615 | 0 | 0 | 7 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.8485 | 100.0000 | 73.6842 | 97.0769 | 1 | 0 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 96.3934 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | homalt | 61.5385 | 100.0000 | 44.4444 | 52.6316 | 4 | 0 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 54.5455 | 100.0000 | 37.5000 | 98.6395 | 2 | 0 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | homalt | 84.8485 | 100.0000 | 73.6842 | 95.0262 | 12 | 0 | 14 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | D1_5 | * | hetalt | 89.9947 | 83.6798 | 97.3404 | 85.7251 | 8573 | 1672 | 183 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4948 | 99.6956 | 99.2948 | 79.7023 | 655 | 2 | 704 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 66.2037 | 61.1111 | 72.2222 | 98.0456 | 11 | 7 | 13 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 66.1017 | 59.0909 | 75.0000 | 98.0276 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 66.1017 | 59.0909 | 75.0000 | 98.0658 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 80.5997 | 68.6567 | 97.5728 | 58.5513 | 230 | 105 | 201 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | * | 77.1930 | 91.6667 | 66.6667 | 67.3913 | 11 | 1 | 10 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.6667 | 25.0000 | 28.5714 | 75.0000 | 1 | 3 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 50.0000 | 28.5714 | 68.1818 | 1 | 1 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.9826 | 70.2857 | 98.3498 | 45.7961 | 123 | 52 | 298 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 48.0000 | 66.6667 | 37.5000 | 87.6923 | 2 | 1 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.0000 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.1579 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.9594 | 63.6364 | 64.2857 | 94.1909 | 7 | 4 | 9 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | homalt | 87.8049 | 100.0000 | 78.2609 | 90.9091 | 19 | 0 | 18 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.7740 | 98.0000 | 97.5490 | 59.2814 | 196 | 4 | 199 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4037 | 99.7908 | 99.0196 | 71.3644 | 477 | 1 | 505 | 5 | 2 | 40.0000 | |