PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29001-29050 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | het | 74.9485 | 60.2649 | 99.0926 | 96.4657 | 546 | 360 | 546 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.0596 | 68.9189 | 98.3923 | 80.6832 | 306 | 138 | 306 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.9139 | 46.2662 | 98.2759 | 80.8707 | 285 | 331 | 285 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | * | 73.9130 | 58.9974 | 98.9224 | 95.6603 | 459 | 319 | 459 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | het | 76.1457 | 62.0690 | 98.4802 | 96.0428 | 324 | 198 | 324 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.5348 | 97.9964 | 99.0792 | 78.0340 | 538 | 11 | 538 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9373 | 98.2533 | 99.6310 | 67.7611 | 1350 | 24 | 1350 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7732 | 97.1519 | 98.4026 | 72.3498 | 307 | 9 | 308 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.0741 | 99.0741 | 99.0741 | 82.5186 | 535 | 5 | 535 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3871 | 98.3871 | 98.3871 | 88.2620 | 305 | 5 | 305 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4488 | 97.9424 | 98.9605 | 85.8903 | 476 | 10 | 476 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4833 | 97.9879 | 98.9837 | 87.1170 | 487 | 10 | 487 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | het | 98.5163 | 98.0315 | 99.0060 | 87.2108 | 498 | 10 | 498 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | homalt | 99.3684 | 99.7886 | 98.9518 | 92.7375 | 472 | 1 | 472 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6385 | 99.6385 | 99.6385 | 58.9249 | 1378 | 5 | 1378 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.3266 | 98.8459 | 99.8120 | 86.8985 | 2655 | 31 | 2655 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.3346 | 98.8595 | 99.8143 | 86.9517 | 2687 | 31 | 2687 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.8054 | 92.7536 | 92.8571 | 88.0342 | 64 | 5 | 65 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | homalt | 99.6905 | 99.4469 | 99.9354 | 59.4017 | 7731 | 43 | 7731 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | * | 99.9314 | 99.9771 | 99.8857 | 28.0901 | 4370 | 1 | 4370 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | het | 99.8872 | 99.9624 | 99.8121 | 28.8312 | 2656 | 1 | 2656 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4917 | 99.6183 | 99.3655 | 63.7701 | 783 | 3 | 783 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.6780 | 86.2903 | 95.5357 | 87.6243 | 107 | 17 | 107 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.6482 | 99.4280 | 99.8694 | 61.5639 | 3824 | 22 | 3824 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | homalt | 99.6826 | 99.4932 | 99.8728 | 70.1019 | 3926 | 20 | 3926 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.6933 | 99.5102 | 99.8771 | 72.6980 | 4063 | 20 | 4063 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.6971 | 99.5162 | 99.8786 | 72.6929 | 4114 | 20 | 4114 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.8071 | 88.7770 | 99.4413 | 46.0843 | 2381 | 301 | 890 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 94.5455 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1240 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 88.0000 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5254 | 97.5543 | 99.5160 | 81.1874 | 1077 | 27 | 1028 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8005 | 98.3333 | 99.2722 | 82.8678 | 708 | 12 | 682 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7358 | 99.5369 | 99.9354 | 58.2970 | 7738 | 36 | 7738 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7125 | 99.9446 | 58.6136 | 9017 | 26 | 9016 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8261 | 99.7070 | 99.9456 | 61.2864 | 9187 | 27 | 9186 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | * | func_cds | * | 98.6486 | 98.4270 | 98.8713 | 35.8900 | 438 | 7 | 438 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1485 | 96.6825 | 97.6190 | 55.2239 | 204 | 7 | 205 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | het | 68.9655 | 71.4286 | 66.6667 | 90.5660 | 10 | 4 | 10 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.1751 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | het | 72.7273 | 75.0000 | 70.5882 | 91.4573 | 12 | 4 | 12 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | het | 72.7273 | 75.0000 | 70.5882 | 91.7476 | 12 | 4 | 12 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | het | 61.6561 | 45.2174 | 96.8750 | 79.2746 | 156 | 189 | 155 | 5 | 2 | 40.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |