PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
2851-2900 / 86044 show all
cchapple-customSNPtimap_l100_m1_e0*
97.7073
97.6424
97.7722
66.9622
468011130467831066270
25.3283
ciseli-customSNPtimap_l250_m1_e0*
70.0357
66.4337
74.0506
91.7565
3042153730421066196
18.3865
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
65.5717
86.0759
52.9568
90.4618
12241981200106655
5.1595
gduggal-snapplatSNPtimap_l125_m1_e0*
94.1774
92.2277
96.2113
79.7747
270552280270701066586
54.9719
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
56.1509
52.5940
60.2239
47.9612
110599616141066694
65.1032
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.5242
92.9345
92.1175
55.9701
12785972124461065828
77.7465
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.5242
92.9345
92.1175
55.9701
12785972124461065828
77.7465
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.0230
88.4886
91.6115
43.8230
6534850116311065307
28.8263
gduggal-snapplatSNPtimap_l125_m2_e1het
94.1854
93.9645
94.4074
84.4472
179351152179611064575
54.0414
gduggal-snapplatSNPtvmap_sirenhet
96.1131
95.9558
96.2709
75.9094
274521157274681064479
45.0188
cchapple-customSNPtimap_l100_m1_e0het
97.1277
97.7690
96.4947
71.3539
29274668292901064268
25.1880
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.7408
91.6287
98.0717
68.7918
142731304540621063839
78.9276
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.2830
86.8621
93.9845
38.9075
1087616451660810631029
96.8015
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964
qzeng-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
75.3156
74.9046
75.7313
50.0285
294398633141062550
51.7891
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.2062
93.5907
90.8621
57.8426
10572724105501061847
79.8303
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.6236
78.3459
33.1864
69.7120
52114452710611053
99.2460
gduggal-snapplatSNPtimap_l125_m2_e0het
94.1306
93.9023
94.3600
84.4255
177251151177511061573
54.0057
ghariani-varprowlSNP*map_l150_m2_e0*
97.6045
98.4962
96.7287
80.6842
31373479313731061223
21.0179
gduggal-bwavardINDELI6_15HG002complexvar*
69.2732
64.9624
74.1967
53.0461
3113167930481060990
93.3962
gduggal-bwaplatINDELI1_5**
93.7478
88.8514
99.2155
64.5183
133867167971337981058675
63.7996
eyeh-varpipeINDEL*HG002compoundhethet
65.1467
80.9233
54.5181
69.0092
331378112671057968
91.5799
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
53.3749
90.5160
37.8458
56.6360
6496864310561003
94.9811
gduggal-snapfbSNPtimap_l100_m2_e1*
97.8010
97.7367
97.8655
68.4763
483651120483701055457
43.3175
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
gduggal-bwavardINDELD6_15HG002complexvar*
76.1590
74.2173
78.2051
56.8522
3935136737821054954
90.5123
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4674
99.0988
97.8440
74.2336
47836435477871053987
93.7322
gduggal-snapplatSNPtimap_l125_m1_e0het
93.9862
93.7479
94.2256
83.3757
171241142171501051571
54.3292
ghariani-varprowlINDELI1_5HG002compoundhethomalt
36.8099
93.9210
22.8907
61.1792
309203121051920
87.5357
gduggal-snapfbSNPtimap_l100_m2_e0*
97.7846
97.7165
97.8527
68.4501
478431118478481050457
43.5238
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
41.1383
38.1818
44.5910
44.9927
5048168451050781
74.3810
gduggal-bwavardINDELI6_15HG002complexvarhet
78.6071
93.9278
67.5834
56.2348
221214321871049981
93.5176
ckim-dragenSNP*map_l125_m2_e1het
97.7443
98.9710
96.5476
78.6185
2933530529336104991
8.6749
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
52.7742
65.9483
43.9872
44.8571
3061588231048780
74.4275
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
36.6612
27.4933
55.0021
33.8540
20453812811048886
84.5420
asubramanian-gatkINDEL*HG002compoundhethomalt
56.3380
99.1254
39.3519
82.7957
68066801048928
88.5496
ghariani-varprowlSNP*map_l100_m0_e0*
97.6658
98.4806
96.8644
74.2691
32342499323441047227
21.6810
ckim-dragenSNP*map_l125_m1_e0*
98.3997
99.0866
97.7222
72.8507
44913414449191047117
11.1748
ciseli-customSNPtvmap_l125_m0_e0*
75.4859
70.1855
81.6523
81.6008
4654197746551046265
25.3346
anovak-vgINDEL*map_l100_m1_e0*
72.2354
72.6157
71.8590
84.0163
260498226711046628
60.0382
ndellapenna-hhgaSNP**het
99.8554
99.7670
99.9441
18.2036
1869221436618692411046128
12.2371
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
96.4780
96.5462
96.4099
50.7305
19176686280901046443
42.3518
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
jpowers-varprowlINDELI1_5HG002compoundhethomalt
36.7720
93.9210
22.8614
60.8545
309203101046940
89.8662
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.3256
86.6375
42.8337
90.6835
791122783104545
4.3062
gduggal-snapfbSNPtvmap_siren*
98.2058
98.6697
97.7461
64.5313
45319611453201045278
26.6029