PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28901-28950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.5083 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 87.1795 | 95.5017 | 0 | 0 | 34 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | het | 98.2935 | 100.0000 | 96.6443 | 81.6953 | 4 | 0 | 144 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 82.1429 | 96.4780 | 0 | 0 | 23 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.7830 | 26.3158 | 81.4815 | 82.9114 | 5 | 14 | 22 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 46.6667 | 58.3333 | 90.9091 | 7 | 8 | 7 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.3340 | 49.2754 | 92.6471 | 74.9077 | 34 | 35 | 63 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 2.7934 | 1.4257 | 68.7500 | 77.7778 | 7 | 484 | 11 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 48.9649 | 34.0426 | 87.1795 | 93.5323 | 16 | 31 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 50.4854 | 35.2941 | 88.6364 | 93.5007 | 18 | 33 | 39 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.9096 | 97.6471 | 96.1832 | 92.2623 | 83 | 2 | 126 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | hetalt | 50.2165 | 34.5238 | 92.0635 | 93.5910 | 29 | 55 | 58 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 54.5455 | 100.0000 | 37.5000 | 88.8889 | 1 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 28.5714 | 89.5522 | 0 | 0 | 2 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.5874 | 1.8349 | 80.0000 | 78.6325 | 16 | 856 | 20 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | homalt | 82.2909 | 80.7692 | 83.8710 | 91.6890 | 21 | 5 | 26 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 12.5922 | 6.7449 | 94.6237 | 51.3089 | 23 | 318 | 88 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 5 | 4 | 80.0000 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.3116 | 70.0000 | 94.1860 | 83.6812 | 42 | 18 | 81 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 17.4592 | 9.6774 | 89.1304 | 79.6460 | 21 | 196 | 41 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 37.5000 | 99.1091 | 0 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 72.0000 | 62.7907 | 84.3750 | 80.1242 | 27 | 16 | 27 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.1443 | 80.8806 | 99.2888 | 68.7833 | 698 | 165 | 698 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.9907 | 61.6646 | 98.9879 | 43.7998 | 489 | 304 | 489 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9339 | 77.1098 | 99.6266 | 47.5519 | 1334 | 396 | 1334 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 40.1515 | 25.7282 | 91.3793 | 89.3186 | 53 | 153 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 35.7143 | 22.5564 | 85.7143 | 93.7500 | 30 | 103 | 30 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 70.6542 | 55.4252 | 97.4227 | 64.6630 | 189 | 152 | 189 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.1304 | 25.4717 | 84.3750 | 92.8731 | 27 | 79 | 27 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 37.0130 | 23.1707 | 91.9355 | 92.3551 | 57 | 189 | 57 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 70.3704 | 55.0000 | 97.6636 | 65.3160 | 209 | 171 | 209 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 59.7926 | 44.5455 | 90.9091 | 96.3211 | 49 | 61 | 50 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 49.0051 | 33.5664 | 90.7407 | 98.6432 | 48 | 95 | 49 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7591 | 92.2386 | 99.5591 | 69.5815 | 1129 | 95 | 1129 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | homalt | 98.7827 | 97.7455 | 99.8422 | 90.3210 | 3165 | 73 | 3164 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | het | 61.5385 | 100.0000 | 44.4444 | 96.2185 | 4 | 0 | 4 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | * | 63.1579 | 75.0000 | 54.5455 | 96.1404 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | * | 63.1579 | 75.0000 | 54.5455 | 96.2963 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.2825 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |