PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28501-28550 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.0000 | 100.0000 | 88.6792 | 36.1446 | 47 | 0 | 47 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | homalt | 98.2393 | 97.2868 | 99.2105 | 85.0600 | 753 | 21 | 754 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | homalt | 97.8487 | 96.9512 | 98.7629 | 87.9353 | 477 | 15 | 479 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 89.8305 | 95.8245 | 0 | 0 | 53 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1155 | 0 | 0 | 33 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 89.8305 | 89.5390 | 0 | 0 | 53 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 84.6154 | 90.1515 | 0 | 0 | 33 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 60.0000 | 93.5345 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 45.4545 | 90.4348 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 45.4545 | 89.5238 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 71.4286 | 94.5596 | 0 | 0 | 15 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 62.5000 | 94.5946 | 0 | 0 | 10 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1323 | 99.5671 | 98.7013 | 53.8462 | 460 | 2 | 456 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1538 | 98.0392 | 94.3396 | 51.5982 | 100 | 2 | 100 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1453 | 97.1129 | 99.2000 | 58.1707 | 740 | 22 | 744 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4772 | 99.5662 | 99.3884 | 73.4002 | 918 | 4 | 975 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6803 | 99.5094 | 99.8517 | 35.3111 | 4057 | 20 | 4039 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6929 | 99.6061 | 99.7799 | 36.0694 | 2276 | 9 | 2720 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | map_siren | homalt | 98.7468 | 98.0308 | 99.4732 | 77.4812 | 1145 | 23 | 1133 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | * | hetalt | 95.6301 | 91.6749 | 99.9419 | 60.1212 | 10263 | 932 | 10325 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6000 | 99.6361 | 99.5640 | 74.0720 | 1369 | 5 | 1370 | 6 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | homalt | 99.5056 | 99.5050 | 99.5062 | 78.6204 | 1206 | 6 | 1209 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | I6_15 | * | hetalt | 95.9700 | 92.3167 | 99.9244 | 35.7056 | 7894 | 657 | 7935 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.4521 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4810 | 98.0100 | 98.9565 | 72.9412 | 591 | 12 | 569 | 6 | 2 | 33.3333 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5163 | 96.6321 | 98.4169 | 91.0275 | 373 | 13 | 373 | 6 | 4 | 66.6667 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.2678 | 96.7391 | 97.8022 | 91.0404 | 267 | 9 | 267 | 6 | 4 | 66.6667 | |
| ckim-gatk | SNP | ti | HG002compoundhet | homalt | 99.4702 | 99.0262 | 99.9181 | 30.6914 | 7322 | 72 | 7322 | 6 | 6 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7574 | 99.9306 | 99.5848 | 69.2619 | 1439 | 1 | 1439 | 6 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6728 | 100.0000 | 99.3478 | 70.2554 | 914 | 0 | 914 | 6 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4064 | 99.2885 | 99.5246 | 88.1335 | 1256 | 9 | 1256 | 6 | 6 | 100.0000 | |
| ckim-gatk | SNP | tv | segdup | homalt | 99.5043 | 99.1970 | 99.8135 | 89.9144 | 3212 | 26 | 3212 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.2572 | 77.2727 | 95.0820 | 73.0088 | 102 | 30 | 116 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.0000 | 43.7500 | 77.7778 | 99.2094 | 7 | 9 | 21 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | het | 76.2961 | 62.7566 | 97.2851 | 94.2982 | 214 | 127 | 215 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 93.8776 | 0 | 0 | 3 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 14.2857 | 97.6898 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 55.8807 | 43.1373 | 79.3103 | 88.0165 | 22 | 29 | 23 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |