PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27951-28000 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 77.2947 | 84.2105 | 71.4286 | 97.1429 | 16 | 3 | 15 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4583 | 99.5662 | 99.3506 | 78.2639 | 918 | 4 | 918 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.6621 | 78.3888 | 99.4236 | 31.5582 | 1012 | 279 | 1035 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8160 | 99.7792 | 99.8528 | 43.7655 | 4068 | 9 | 4071 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3532 | 99.3035 | 99.4030 | 66.0014 | 998 | 7 | 999 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2010 | 96.9543 | 99.4801 | 27.1465 | 1146 | 36 | 1148 | 6 | 6 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.9518 | 83.9080 | 92.4051 | 83.8776 | 73 | 14 | 73 | 6 | 4 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.4755 | 89.6226 | 93.4066 | 86.1280 | 95 | 11 | 85 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | homalt | 99.9324 | 99.9459 | 99.9189 | 30.7750 | 7390 | 4 | 7390 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1767 | 98.6892 | 99.6691 | 48.1704 | 1807 | 24 | 1807 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8723 | 85.5204 | 96.9388 | 91.1030 | 189 | 32 | 190 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.5596 | 80.9211 | 95.3846 | 90.3561 | 123 | 29 | 124 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | HG002compoundhet | homalt | 99.7933 | 99.7639 | 99.8228 | 43.5008 | 3380 | 8 | 3380 | 6 | 5 | 83.3333 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8866 | 96.2401 | 99.5904 | 67.7099 | 1459 | 57 | 1459 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8035 | 95.8873 | 99.7978 | 64.0929 | 2961 | 127 | 2961 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.4704 | 93.2214 | 99.9539 | 31.0883 | 12831 | 933 | 13019 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4523 | 93.1870 | 99.9548 | 33.8499 | 13076 | 956 | 13269 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.7187 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1596 | 93.2432 | 97.1564 | 60.5607 | 207 | 15 | 205 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 83.3974 | 728 | 4 | 728 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 86.2069 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 87.5227 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 87.5316 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.7831 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4242 | 100.0000 | 98.8550 | 79.6188 | 518 | 0 | 518 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.4382 | 100.0000 | 98.8827 | 81.1975 | 531 | 0 | 531 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4475 | 100.0000 | 98.9011 | 81.3078 | 540 | 0 | 540 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 94.9664 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1378 | 93.1174 | 97.2477 | 79.5880 | 230 | 17 | 212 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1619 | 95.6967 | 98.6726 | 81.7078 | 467 | 21 | 446 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0769 | 100.0000 | 96.2264 | 77.0893 | 153 | 0 | 153 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9381 | 99.9059 | 99.9703 | 56.7400 | 20180 | 19 | 20180 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3683 | 98.8824 | 99.8589 | 49.4773 | 4247 | 48 | 4247 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0815 | 98.3991 | 99.7735 | 47.4300 | 2643 | 43 | 2643 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.0022 | 90.7095 | 99.7214 | 86.4766 | 2148 | 220 | 2148 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.2750 | 85.9974 | 99.5413 | 87.6183 | 1302 | 212 | 1302 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7476 | 95.6863 | 99.8995 | 66.9763 | 5967 | 269 | 5967 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6524 | 99.3882 | 99.9179 | 31.7465 | 7310 | 45 | 7306 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | het | 96.8662 | 93.9821 | 99.9329 | 37.3774 | 8933 | 572 | 8934 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | homalt | 99.9392 | 99.9594 | 99.9189 | 30.5967 | 7391 | 3 | 7391 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3551 | 98.9186 | 99.7954 | 49.2385 | 2927 | 32 | 2927 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0937 | 98.5254 | 99.6685 | 47.3225 | 1804 | 27 | 1804 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3889 | 98.8731 | 99.9101 | 37.5970 | 6668 | 76 | 6668 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1927 | 91.2096 | 99.5395 | 87.2592 | 1297 | 125 | 1297 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8280 | 87.1851 | 99.2519 | 87.9706 | 796 | 117 | 796 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0979 | 96.4062 | 99.8501 | 81.6005 | 3997 | 149 | 3997 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1484 | 94.6692 | 99.7610 | 81.1745 | 2504 | 141 | 2504 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9888 | 96.2435 | 99.7985 | 65.0879 | 2972 | 116 | 2972 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 90.2264 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |