PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27651-27700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | homalt | 99.2899 | 99.3540 | 99.2258 | 85.3746 | 769 | 5 | 769 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | homalt | 98.8108 | 98.9177 | 98.7041 | 86.8354 | 457 | 5 | 457 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | hetalt | 66.0377 | 62.5000 | 70.0000 | 76.1905 | 45 | 27 | 14 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | homalt | 95.4735 | 91.6524 | 99.6271 | 92.3917 | 1603 | 146 | 1603 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | homalt | 95.4425 | 91.5914 | 99.6317 | 92.4268 | 1623 | 149 | 1623 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | hetalt | 84.6154 | 91.6667 | 78.5714 | 78.4615 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e0 | hetalt | 84.6154 | 91.6667 | 78.5714 | 81.9355 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | hetalt | 84.6154 | 91.6667 | 78.5714 | 81.9355 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | homalt | 92.1348 | 86.6197 | 98.4000 | 84.7437 | 246 | 38 | 369 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 89.2857 | 0 | 0 | 0 | 6 | 2 | 33.3333 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.4615 | 0 | 0 | 0 | 6 | 2 | 33.3333 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 14.2857 | 87.0370 | 0 | 0 | 1 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 14.2857 | 86.2745 | 0 | 0 | 1 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 14.2857 | 86.7925 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 90.1408 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 73.9130 | 95.0108 | 0 | 0 | 17 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 94.0000 | 0 | 0 | 15 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 56.0345 | 40.3727 | 91.5493 | 70.2929 | 65 | 96 | 65 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1082 | 50.8361 | 98.7013 | 60.3433 | 456 | 441 | 456 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 76.6352 | 62.5131 | 99.0000 | 87.0298 | 597 | 358 | 594 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 76.2512 | 62.2951 | 98.2659 | 87.5405 | 342 | 207 | 340 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.9459 | 33.3333 | 73.9130 | 97.2684 | 17 | 34 | 17 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | het | 83.8279 | 72.7156 | 98.9492 | 92.4321 | 565 | 212 | 565 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | het | 83.8663 | 72.7617 | 98.9708 | 93.0529 | 577 | 216 | 577 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | het | 84.0909 | 73.0864 | 98.9967 | 93.0683 | 592 | 218 | 592 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.8475 | 48.3254 | 98.5366 | 81.1754 | 404 | 432 | 404 | 6 | 3 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.7845 | 66.1017 | 97.4895 | 78.8121 | 234 | 120 | 233 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | * | 44.7426 | 28.8993 | 99.0369 | 98.7610 | 617 | 1518 | 617 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | het | 45.3988 | 29.4821 | 98.6667 | 98.9470 | 444 | 1062 | 444 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | * | hetalt | 95.4648 | 92.2680 | 98.8909 | 56.0163 | 537 | 45 | 535 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9588 | 55.9211 | 93.4066 | 97.4184 | 85 | 67 | 85 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 72.8837 | 58.1081 | 97.7358 | 91.6876 | 258 | 186 | 259 | 6 | 5 | 83.3333 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.7486 | 39.5161 | 89.0909 | 97.3583 | 49 | 75 | 49 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 100.0000 | 62.5000 | 99.6580 | 10 | 0 | 10 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 69.3878 | 65.3846 | 73.9130 | 90.4167 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.4110 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 91.7969 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 91.9847 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | * | 84.8678 | 83.7209 | 86.0465 | 37.6812 | 36 | 7 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 45.4545 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |