PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27601-27650 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.4737 | 27.2727 | 71.4286 | 84.6715 | 15 | 40 | 15 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 97.8799 | 0 | 1 | 0 | 6 | 1 | 16.6667 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 32.9670 | 22.7273 | 60.0000 | 98.0964 | 10 | 34 | 9 | 6 | 4 | 66.6667 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 85.1946 | 78.0702 | 93.7500 | 92.5869 | 89 | 25 | 90 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | het | 35.2941 | 37.5000 | 33.3333 | 89.1566 | 3 | 5 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.8195 | 14.3396 | 92.2078 | 60.3093 | 76 | 454 | 71 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 29.5150 | 19.1176 | 64.7059 | 79.0123 | 13 | 55 | 11 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 17 | 0 | 6 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_siren | homalt | 34.4828 | 22.2222 | 76.9231 | 89.1667 | 20 | 70 | 20 | 6 | 2 | 33.3333 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0133 | 98.1991 | 99.8412 | 55.4691 | 3817 | 70 | 3772 | 6 | 3 | 50.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.7768 | 12 | 8 | 12 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.8621 | 91.6667 | 64.7059 | 99.5499 | 11 | 1 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 61.2565 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.8315 | 92.5439 | 97.2350 | 84.8569 | 211 | 17 | 211 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9153 | 92.5620 | 97.3913 | 85.7232 | 224 | 18 | 224 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8240 | 92.3387 | 97.4468 | 85.7230 | 229 | 19 | 229 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.0528 | 90.3101 | 98.1191 | 79.0407 | 233 | 25 | 313 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | het | 54.5455 | 60.0000 | 50.0000 | 62.5000 | 6 | 4 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 94.6381 | 90.5405 | 99.1241 | 73.0527 | 469 | 49 | 679 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 94.4658 | 90.2072 | 99.1465 | 74.1639 | 479 | 52 | 697 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 94.4587 | 90.1852 | 99.1573 | 74.3238 | 487 | 53 | 706 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 81.2500 | 81.2500 | 81.2500 | 95.3148 | 26 | 6 | 26 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 86.9565 | 100.0000 | 76.9231 | 95.7096 | 20 | 0 | 20 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 83.7209 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 86.0000 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 86.0927 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3978 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5714 | 70.5882 | 66.6667 | 94.3750 | 12 | 5 | 12 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | * | 62.2222 | 56.0000 | 70.0000 | 95.3052 | 14 | 11 | 14 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 68.7500 | 73.3333 | 64.7059 | 95.4787 | 11 | 4 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 62.2222 | 56.0000 | 70.0000 | 95.9267 | 14 | 11 | 14 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 68.7500 | 73.3333 | 64.7059 | 96.0465 | 11 | 4 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 68.7500 | 64.7059 | 96.1625 | 11 | 5 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.0827 | 95.2305 | 99.0083 | 93.3038 | 599 | 30 | 599 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3468 | 96.9576 | 99.7764 | 75.9674 | 2677 | 84 | 2677 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.1569 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.7189 | 93.6864 | 99.9542 | 31.7179 | 12895 | 869 | 13083 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6962 | 93.6431 | 99.9550 | 34.4875 | 13140 | 892 | 13333 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8937 | 99.8407 | 99.9468 | 55.7785 | 11278 | 18 | 11278 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.5731 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4001 | 93.6937 | 97.1698 | 60.5948 | 208 | 14 | 206 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | homalt | 99.2491 | 99.3169 | 99.1814 | 84.1205 | 727 | 5 | 727 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | homalt | 99.2796 | 99.3447 | 99.2147 | 85.2510 | 758 | 5 | 758 | 6 | 3 | 50.0000 | |