PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27451-27500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | het | 38.5321 | 30.0000 | 53.8462 | 85.7143 | 6 | 14 | 7 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | homalt | 74.0741 | 71.4286 | 76.9231 | 88.9831 | 20 | 8 | 20 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | homalt | 75.0000 | 72.4138 | 77.7778 | 88.7500 | 21 | 8 | 21 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 72.7674 | 63.8298 | 84.6154 | 79.0323 | 30 | 17 | 33 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | het | 81.9153 | 76.2712 | 88.4615 | 80.2281 | 45 | 14 | 46 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | het | 82.5467 | 77.0492 | 88.8889 | 82.1192 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | het | 82.5467 | 77.0492 | 88.8889 | 82.5243 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | segdup | * | 91.9403 | 88.0000 | 96.2500 | 90.6268 | 154 | 21 | 154 | 6 | 6 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.5000 | 55.5556 | 71.4286 | 97.1074 | 15 | 12 | 15 | 6 | 3 | 50.0000 | |
| mlin-fermikit | SNP | ti | func_cds | het | 99.4565 | 98.9887 | 99.9288 | 17.2332 | 8418 | 86 | 8418 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7834 | 70.9677 | 93.7500 | 90.7514 | 88 | 36 | 90 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.8498 | 75.7576 | 93.8776 | 89.0990 | 100 | 32 | 92 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | homalt | 98.2456 | 98.5915 | 97.9021 | 86.6480 | 280 | 4 | 280 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 87.6408 | 455 | 7 | 455 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 88.7981 | 474 | 7 | 474 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 62.3929 | 45.5428 | 99.0338 | 45.1898 | 751 | 898 | 615 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.6748 | 72.0588 | 89.0909 | 96.9846 | 49 | 19 | 49 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.3774 | 73.9130 | 85.7143 | 59.6154 | 34 | 12 | 36 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.0785 | 89.2857 | 81.2500 | 90.6158 | 25 | 3 | 26 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1637 | 95.4315 | 96.9072 | 51.1335 | 188 | 9 | 188 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9442 | 98.3333 | 91.7808 | 88.6997 | 59 | 1 | 67 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | hetalt | 75.3022 | 64.6465 | 90.1639 | 76.8061 | 64 | 35 | 55 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 90.3719 | 83.8806 | 97.9522 | 65.2019 | 281 | 54 | 287 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 78.8732 | 80.0000 | 77.7778 | 88.7967 | 20 | 5 | 21 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | homalt | 99.4222 | 98.9316 | 99.9177 | 28.6749 | 7315 | 79 | 7282 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | homalt | 99.7369 | 99.5292 | 99.9454 | 62.9489 | 10993 | 52 | 10993 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | homalt | 99.7442 | 99.5422 | 99.9470 | 65.7720 | 11306 | 52 | 11306 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | homalt | 99.7464 | 99.5462 | 99.9474 | 65.8140 | 11406 | 52 | 11407 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | het | 96.9091 | 94.1142 | 99.8751 | 60.5146 | 4797 | 300 | 4797 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | homalt | 99.6922 | 99.4677 | 99.9178 | 67.8010 | 7288 | 39 | 7289 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | homalt | 99.7039 | 99.4879 | 99.9209 | 70.3819 | 7577 | 39 | 7578 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e1 | homalt | 99.7069 | 99.4930 | 99.9217 | 70.4375 | 7654 | 39 | 7656 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | * | 95.0820 | 91.0219 | 99.5211 | 84.7102 | 1247 | 123 | 1247 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.6757 | 82.3529 | 70.0000 | 99.3709 | 14 | 3 | 14 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | het | 50.0000 | 55.5556 | 45.4545 | 92.5676 | 5 | 4 | 5 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 96.5517 | 95.1920 | 0 | 0 | 168 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2977 | 92.4479 | 98.3287 | 77.4356 | 355 | 29 | 353 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0120 | 93.2677 | 98.9228 | 69.2605 | 568 | 41 | 551 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.9977 | 96.8112 | 99.2136 | 36.6279 | 759 | 25 | 757 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9720 | 92.0000 | 98.1424 | 40.7339 | 322 | 28 | 317 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6187 | 99.3868 | 99.8516 | 38.0325 | 4052 | 25 | 4038 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5107 | 96.1083 | 98.9547 | 73.4013 | 568 | 23 | 568 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0134 | 91.7620 | 98.5037 | 40.9426 | 401 | 36 | 395 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6342 | 97.8003 | 99.4823 | 38.0876 | 1156 | 26 | 1153 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 89.5083 | 82.4047 | 97.9522 | 62.7700 | 281 | 60 | 287 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 81.3704 | 86.3636 | 76.9231 | 74.5098 | 19 | 3 | 20 | 6 | 6 | 100.0000 | |