PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27401-27450 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.9387 | 93.6170 | 86.5385 | 51.8519 | 44 | 3 | 45 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 83.7209 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 85.4167 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 85.4167 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 76.6667 | 96.1440 | 0 | 0 | 23 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 96.0684 | 0 | 0 | 16 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.1111 | 97.7070 | 0 | 0 | 11 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.1111 | 97.7070 | 0 | 0 | 11 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4721 | 99.4737 | 99.4705 | 36.2584 | 1323 | 7 | 1315 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 85.3553 | 85.2941 | 85.4167 | 83.5616 | 29 | 5 | 41 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 84.5815 | 82.0513 | 87.2727 | 95.2668 | 32 | 7 | 48 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 65.6250 | 58.3333 | 75.0000 | 80.1418 | 14 | 10 | 21 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 74.5902 | 87.5000 | 65.0000 | 88.2353 | 7 | 1 | 13 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 85.1064 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.6667 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.7925 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 73.9830 | 60.2273 | 95.8824 | 96.2121 | 106 | 70 | 163 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | het | 63.4051 | 47.0954 | 96.9957 | 81.1030 | 227 | 255 | 226 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | het | 64.6730 | 48.4436 | 97.2549 | 83.3442 | 249 | 265 | 248 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | het | 64.8764 | 48.6590 | 97.3077 | 83.3972 | 254 | 268 | 253 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 57.4807 | 40.4480 | 99.2929 | 38.4711 | 957 | 1409 | 983 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | het | 62.9857 | 53.8462 | 75.8621 | 84.2391 | 21 | 18 | 22 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | het | 65.2113 | 55.3191 | 79.4118 | 85.2174 | 26 | 21 | 27 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 72.1094 | 57.6923 | 96.1326 | 57.6112 | 165 | 121 | 174 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2745 | 100.0000 | 75.8621 | 83.7079 | 22 | 0 | 22 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.8856 | 69.5341 | 96.6667 | 66.1290 | 194 | 85 | 203 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 53.3029 | 36.7089 | 97.2763 | 43.3921 | 232 | 400 | 250 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 32.8502 | 62.9630 | 22.2222 | 78.5714 | 17 | 10 | 2 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 80.7772 | 68.1698 | 99.1060 | 43.0545 | 771 | 360 | 776 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | het | 63.4349 | 47.1193 | 97.0339 | 78.6038 | 229 | 257 | 229 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | het | 63.7838 | 47.4849 | 97.1193 | 82.2238 | 236 | 261 | 236 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | het | 64.4737 | 48.2283 | 97.2222 | 82.1403 | 245 | 263 | 245 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | * | 71.1252 | 62.2642 | 82.9268 | 83.4677 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | * | 71.1252 | 62.2642 | 82.9268 | 86.1017 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | * | 71.1252 | 62.2642 | 82.9268 | 86.6013 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | SNP | * | tech_badpromoters | homalt | 95.1807 | 98.7500 | 91.8605 | 44.8718 | 79 | 1 | 79 | 7 | 6 | 85.7143 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 47.6190 | 55.5556 | 41.6667 | 96.1905 | 5 | 4 | 5 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | homalt | 53.8462 | 53.8462 | 53.8462 | 92.8571 | 7 | 6 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | segdup | homalt | 98.3264 | 98.3287 | 98.3240 | 93.5215 | 353 | 6 | 352 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.0000 | 100.0000 | 53.8462 | 99.7623 | 6 | 0 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.7879 | 76.4706 | 81.2500 | 88.3636 | 26 | 8 | 26 | 6 | 6 | 100.0000 | |