PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27001-27050 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 7.4074 | 4.1237 | 36.3636 | 95.4545 | 4 | 93 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | het | 12.9032 | 7.8431 | 36.3636 | 95.2790 | 4 | 47 | 4 | 7 | 2 | 28.5714 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | het | 87.2727 | 100.0000 | 77.4194 | 39.2157 | 24 | 0 | 24 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 61.2245 | 55.5556 | 68.1818 | 95.6693 | 15 | 12 | 15 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | het | 95.0000 | 98.7013 | 91.5663 | 57.6531 | 76 | 1 | 76 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 84.6154 | 75.8621 | 96.7634 | 22 | 4 | 22 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.6842 | 82.3529 | 66.6667 | 96.9741 | 14 | 3 | 14 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9479 | 94.1155 | 99.9561 | 40.9419 | 15722 | 983 | 15944 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9479 | 94.1155 | 99.9561 | 40.9419 | 15722 | 983 | 15944 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | * | hetalt | 22.2222 | 100.0000 | 12.5000 | 85.4545 | 1 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.2222 | 80.0000 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 68.1818 | 0 | 0 | 0 | 7 | 5 | 71.4286 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.4625 | 98.0645 | 98.8636 | 87.2332 | 608 | 12 | 609 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 47.3186 | 31.7661 | 92.7083 | 19.3277 | 277 | 595 | 89 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | * | 83.1665 | 75.2137 | 93.0000 | 84.8485 | 88 | 29 | 93 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | * | 83.4615 | 75.3968 | 93.4579 | 84.7795 | 95 | 31 | 100 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | * | 83.2418 | 75.0000 | 93.5185 | 84.8739 | 96 | 32 | 101 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | homalt | 89.5161 | 85.3846 | 94.0678 | 84.8912 | 111 | 19 | 111 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I1_5 | func_cds | * | 96.9697 | 97.7778 | 96.1749 | 35.5634 | 176 | 4 | 176 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 75.3210 | 73.3333 | 77.4194 | 92.1717 | 33 | 12 | 24 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3810 | 91.5094 | 93.2692 | 96.3636 | 97 | 9 | 97 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.4297 | 28.6501 | 89.7059 | 44.7154 | 104 | 259 | 61 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0807 | 99.5893 | 98.5772 | 65.8570 | 485 | 2 | 485 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6420 | 97.5355 | 99.7738 | 49.4362 | 3087 | 78 | 3087 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 84.6154 | 95.6522 | 75.8621 | 82.5301 | 22 | 1 | 22 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.9134 | 96.7213 | 89.3939 | 84.5794 | 59 | 2 | 59 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.4410 | 87.8049 | 91.1392 | 77.4286 | 72 | 10 | 72 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 59.4059 | 43.6893 | 92.7835 | 59.2437 | 90 | 116 | 90 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |