PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
2651-2700 / 86044 show all
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.8948
28.9913
40.7948
49.7853
799195781111771070
90.9091
anovak-vgINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
70.9064
96.1777
56.1521
58.9971
93137150611761140
96.9388
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.5852
99.2612
97.9184
64.7490
55220411553201176260
22.1088
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
65.6871
92.0525
51.0621
85.0059
119310312261175118
10.0426
gduggal-bwavardSNPtimap_l125_m0_e0*
94.2056
97.3045
91.2979
82.1654
1241834412317117466
5.6218
jlack-gatkSNPtvmap_l100_m0_e0het
91.9563
98.9477
85.8877
83.2329
7146767145117461
5.1959
gduggal-bwavardSNPtvmap_l150_m2_e1*
94.1240
97.9830
90.5575
83.2923
1127023211240117251
4.3515
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.7133
98.5372
89.3396
84.5796
1064315898221172111
9.4710
asubramanian-gatkSNPtv**
98.7904
97.7276
99.8765
24.3508
94765522035947577117261
5.2048
anovak-vgINDELI1_5HG002complexvarhet
44.4856
30.2381
84.1220
66.7223
55001268962041171683
58.3262
jli-customINDEL***
99.3675
99.0788
99.6580
57.6935
34136831743412131171951
81.2126
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
29.9351
28.5016
31.5205
88.2158
5251317539117152
4.4407
gduggal-bwavardSNPtvmap_l150_m2_e0*
94.0699
97.9833
90.4572
83.2501
1112622911100117150
4.2699
gduggal-bwavardSNPtvmap_l100_m0_e0*
93.8772
97.8167
90.2427
78.7360
1084224210821117050
4.2735
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.1636
88.4927
76.6793
63.1888
359946838471170372
31.7949
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.4414
76.5741
80.4020
77.5023
46581425480011701056
90.2564
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.2548
97.7351
94.8187
76.1564
214034962139311691072
91.7023
ghariani-varprowlSNPtvmap_sirenhet
97.7279
99.4512
96.0633
68.6369
28452157284531166112
9.6055
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
84.5148
96.2617
75.3230
67.9780
17516835561165308
26.4378
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
84.5148
96.2617
75.3230
67.9780
17516835561165308
26.4378
gduggal-bwavardSNPtimap_l125_m0_e0het
92.1685
97.6038
87.3066
84.9758
80651988013116559
5.0644
gduggal-bwavardSNPtvmap_l150_m2_e1het
91.8305
98.3805
86.0982
85.8449
72291197209116445
3.8660
jlack-gatkSNPtvmap_l150_m2_e1*
94.5415
98.7220
90.7006
84.3649
1135514711353116468
5.8419
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
gduggal-snapvardSNPtimap_l250_m1_e0*
86.1545
95.0207
78.8017
91.2590
43512284327116468
5.8419
gduggal-bwavardSNPtvmap_l100_m0_e0het
91.6040
98.1446
85.8808
81.9878
70881347074116345
3.8693
gduggal-bwavardSNPtvmap_l150_m2_e0het
91.7382
98.3591
85.9524
85.7991
71331197116116344
3.7833
gduggal-bwavardSNPtvmap_l150_m1_e0*
93.9183
97.9839
90.1767
82.0762
1069222010667116250
4.3029
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.1821
88.1350
82.4206
72.9298
537872454481162656
56.4544
eyeh-varpipeSNP*HG002complexvarhet
99.8105
99.8904
99.7307
18.2348
4649905104296101160174
15.0000
gduggal-snapvardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.5113
95.2894
72.7551
82.9109
30951533095115930
2.5884
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
58.3043
52.2088
66.0112
56.8516
20801904224911581030
88.9465
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.0369
75.9494
80.2425
77.9111
46201463469911571067
92.2213
jpowers-varprowlSNP*map_l100_m1_e0*
98.0599
97.7308
98.3912
69.8054
707601643707621157328
28.3492
gduggal-snapvardSNPtimap_l250_m1_e0het
81.6091
95.8895
71.0309
92.1854
28461222832115561
5.2814
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
77.2126
92.3546
66.3363
73.7008
2271188227611551093
94.6320
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
91.0906
96.0483
86.6196
46.4616
262510874771155540
46.7532
gduggal-bwavardSNPtvmap_l150_m1_e0het
91.4999
98.3732
85.5243
84.8383
68331136818115444
3.8128
jlack-gatkSNPtvmap_l150_m2_e0*
94.5181
98.7142
90.6642
84.3431
1120914611207115467
5.8059
jlack-gatkSNPtvmap_l150_m2_e1het
92.1722
98.8977
86.3032
87.0729
7267817265115360
5.2038
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.7447
84.4675
83.0341
89.9808
562310345643115377
6.6782
gduggal-snapfbSNP*map_l100_m0_e0*
96.4309
96.3734
96.4883
71.4997
316501191316531152513
44.5312
anovak-vgINDEL*map_sirenhomalt
77.1234
89.6798
67.6512
75.5300
2381274240511501080
93.9130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.7126
30.6097
42.8571
50.7598
73816738611148864
75.2613
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
34.4736
24.7232
56.9231
34.0999
737224415171148971
84.5819
gduggal-snapfbSNP*map_l150_m2_e1*
96.3459
96.2620
96.4300
78.3975
310061204310091148531
46.2544
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860