PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26901-26950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9703 | 74.2812 | 99.2529 | 37.7409 | 930 | 322 | 930 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.1229 | 95.5140 | 98.7868 | 83.6312 | 511 | 24 | 570 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.8578 | 97.1545 | 98.5714 | 57.5022 | 478 | 14 | 483 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | homalt | 99.0600 | 98.6960 | 99.4267 | 80.9576 | 1211 | 16 | 1214 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | homalt | 99.4223 | 99.0555 | 99.7918 | 42.9493 | 3356 | 32 | 3355 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9011 | 98.5761 | 99.2282 | 89.6010 | 900 | 13 | 900 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.9887 | 93.1694 | 98.9840 | 82.2879 | 682 | 50 | 682 | 7 | 4 | 57.1429 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.5010 | 97.5270 | 99.4946 | 34.2043 | 1262 | 32 | 1378 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5098 | 96.8750 | 98.1530 | 84.0622 | 372 | 12 | 372 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.3955 | 88.8889 | 91.9540 | 93.3231 | 80 | 10 | 80 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.5263 | 88.6598 | 92.4731 | 93.0337 | 86 | 11 | 86 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3908 | 98.3908 | 98.3908 | 65.9891 | 428 | 7 | 428 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2973 | 98.0198 | 96.5854 | 90.5790 | 198 | 4 | 198 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | homalt | 99.7015 | 100.0000 | 99.4048 | 61.4173 | 1169 | 0 | 1169 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | * | 97.7205 | 96.8566 | 98.6000 | 82.0660 | 493 | 16 | 493 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | I16_PLUS | * | hetalt | 96.3839 | 93.3270 | 99.6479 | 53.7674 | 1958 | 140 | 1981 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4518 | 90.7445 | 98.4749 | 72.4655 | 451 | 46 | 452 | 7 | 5 | 71.4286 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3854 | 100.0000 | 98.7784 | 71.6337 | 564 | 0 | 566 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.9428 | 76.2136 | 95.9302 | 45.5696 | 157 | 49 | 165 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5785 | 99.8122 | 99.3458 | 67.3382 | 1063 | 2 | 1063 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8665 | 90.7063 | 97.2549 | 74.0590 | 244 | 25 | 248 | 7 | 5 | 71.4286 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8148 | 99.6933 | 99.9367 | 55.5774 | 11050 | 34 | 11048 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | * | map_l150_m0_e0 | homalt | 99.5955 | 99.3641 | 99.8280 | 71.6988 | 4063 | 26 | 4063 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7828 | 99.7106 | 99.8551 | 69.0939 | 4823 | 14 | 4823 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.8789 | 99.7181 | 29.8389 | 2475 | 3 | 2476 | 7 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l250_m0_e0 | het | 96.7636 | 94.4325 | 99.2126 | 90.7809 | 882 | 52 | 882 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6683 | 99.5308 | 99.8063 | 75.9886 | 3606 | 17 | 3606 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4191 | 94.1441 | 96.7290 | 64.9180 | 209 | 13 | 207 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.9841 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.8997 | 98.7080 | 99.0921 | 87.0551 | 764 | 10 | 764 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2580 | 95.1314 | 99.4819 | 36.3636 | 1231 | 63 | 1344 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.2690 | 95.1945 | 99.4359 | 31.3606 | 1248 | 63 | 1234 | 7 | 4 | 57.1429 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | homalt | 95.1351 | 92.9577 | 97.4170 | 87.2290 | 264 | 20 | 264 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 75.0000 | 99.9757 | 0 | 1 | 21 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 74.0741 | 99.9731 | 0 | 0 | 20 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | homalt | 57.7796 | 43.0769 | 87.7193 | 72.0588 | 56 | 74 | 50 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_siren | homalt | 93.7374 | 88.6964 | 99.3860 | 68.7586 | 1075 | 137 | 1133 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2185 | 96.7495 | 99.7328 | 29.9465 | 2649 | 89 | 2613 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | homalt | 95.9878 | 93.3227 | 98.8095 | 92.9615 | 587 | 42 | 581 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5864 | 98.0186 | 99.1607 | 45.3115 | 841 | 17 | 827 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1847 | 95.8015 | 98.6083 | 75.1972 | 502 | 22 | 496 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 31.2500 | 21.2766 | 58.8235 | 98.2528 | 10 | 37 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7574 | 27.8075 | 92.4731 | 71.5596 | 104 | 270 | 86 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.4371 | 20.4225 | 78.7879 | 49.2308 | 29 | 113 | 26 | 7 | 4 | 57.1429 | |