PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26851-26900 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | het | 96.8039 | 94.0074 | 99.7719 | 81.1683 | 3059 | 195 | 3062 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | homalt | 99.0027 | 98.2290 | 99.7886 | 40.4282 | 3328 | 60 | 3304 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6449 | 97.8200 | 99.4838 | 84.0414 | 1391 | 31 | 1349 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.4424 | 97.6999 | 99.1963 | 85.4542 | 892 | 21 | 864 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8395 | 99.7434 | 99.9357 | 57.3637 | 10883 | 28 | 10887 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8004 | 99.7008 | 99.9001 | 56.9199 | 6998 | 21 | 7003 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8184 | 99.8912 | 99.7456 | 35.4899 | 2755 | 3 | 2745 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | homalt | 99.8561 | 99.7899 | 99.9225 | 60.9412 | 9024 | 19 | 9023 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8534 | 99.7829 | 99.9239 | 63.3991 | 9194 | 20 | 9193 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8548 | 99.7850 | 99.9246 | 63.4100 | 9282 | 20 | 9281 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 89.2216 | 80.9904 | 99.3151 | 34.7798 | 1014 | 238 | 1015 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | het | 95.8851 | 93.1857 | 98.7455 | 80.3036 | 547 | 40 | 551 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | het | 91.6047 | 85.7143 | 98.3645 | 86.9869 | 6 | 1 | 421 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 95.6250 | 96.0851 | 0 | 0 | 153 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.2459 | 92.8571 | 78.7879 | 96.6734 | 26 | 2 | 26 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | * | 97.8593 | 100.0000 | 95.8084 | 53.8674 | 159 | 0 | 160 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | het | 96.0894 | 100.0000 | 92.4731 | 62.6506 | 85 | 0 | 86 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3908 | 98.3908 | 98.3908 | 69.9793 | 428 | 7 | 428 | 7 | 3 | 42.8571 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6154 | 86.5925 | 99.5389 | 29.1978 | 1479 | 229 | 1511 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3640 | 99.1541 | 99.5747 | 61.1334 | 1641 | 14 | 1639 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 96.0938 | 97.6190 | 94.6154 | 92.1734 | 123 | 3 | 123 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 92.5431 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.4949 | 309 | 0 | 309 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9648 | 89.8058 | 96.3542 | 88.3918 | 185 | 21 | 185 | 7 | 3 | 42.8571 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.6792 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2056 | 99.6454 | 98.7698 | 73.1350 | 562 | 2 | 562 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5638 | 99.6361 | 99.4916 | 74.0824 | 1369 | 5 | 1370 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 96.1457 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8116 | 99.6584 | 99.9652 | 56.5451 | 20130 | 69 | 20130 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7764 | 99.6650 | 99.8881 | 47.1210 | 6247 | 21 | 6247 | 7 | 3 | 42.8571 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | homalt | 84.6124 | 73.3575 | 99.9469 | 64.1277 | 13175 | 4785 | 13175 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | * | 94.9438 | 93.8889 | 96.0227 | 35.7664 | 169 | 11 | 169 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.4695 | 96.2963 | 98.6717 | 76.3359 | 520 | 20 | 520 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 90.2913 | 87.7358 | 93.0000 | 96.0723 | 93 | 13 | 93 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | het | 89.3939 | 89.3939 | 89.3939 | 97.2454 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 89.3939 | 89.3939 | 89.3939 | 97.3419 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.5556 | 80.5556 | 80.5556 | 64.0000 | 29 | 7 | 29 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 62.0690 | 50.9434 | 79.4118 | 90.3683 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 62.0690 | 50.9434 | 79.4118 | 91.7073 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 62.0690 | 50.9434 | 79.4118 | 91.9048 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | SNP | ti | func_cds | homalt | 99.9052 | 99.9431 | 99.8674 | 21.7810 | 5272 | 3 | 5272 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |