PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26701-26750 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | het | 75.4825 | 69.5652 | 82.5000 | 81.5668 | 32 | 14 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | het | 73.7430 | 66.6667 | 82.5000 | 83.6735 | 32 | 16 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | het | 75.4265 | 68.6275 | 83.7209 | 82.8685 | 35 | 16 | 36 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | het | 81.3293 | 81.0811 | 81.5789 | 88.3436 | 30 | 7 | 31 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | homalt | 43.7956 | 41.6667 | 46.1538 | 91.0345 | 5 | 7 | 6 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 84.0909 | 99.9156 | 0 | 0 | 37 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.3470 | 97.9730 | 96.7290 | 90.0047 | 145 | 3 | 207 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7289 | 97.8070 | 97.6510 | 89.7805 | 223 | 5 | 291 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | het | 91.4037 | 93.3333 | 89.5522 | 86.6534 | 56 | 4 | 60 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | hetalt | 21.9016 | 12.5373 | 86.5385 | 70.1149 | 42 | 293 | 45 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | hetalt | 18.8882 | 10.4634 | 96.9432 | 40.6736 | 219 | 1874 | 222 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 24.4399 | 15.1515 | 63.1579 | 53.6585 | 10 | 56 | 12 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 14.5540 | 7.8947 | 93.0000 | 54.7511 | 30 | 350 | 93 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 40.9449 | 27.6596 | 78.7879 | 64.1304 | 13 | 34 | 26 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.8198 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0472 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.7578 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0238 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 66.6667 | 98.7791 | 0 | 2 | 14 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6996 | 99.6713 | 99.7279 | 30.4782 | 2729 | 9 | 2566 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 100.0000 | 46.1538 | 96.7581 | 9 | 0 | 6 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4164 | 99.4681 | 99.3648 | 53.1463 | 1122 | 6 | 1095 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4124 | 99.3179 | 99.5070 | 45.2160 | 1456 | 10 | 1413 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | homalt | 99.8623 | 99.8226 | 99.9020 | 73.1001 | 7314 | 13 | 7136 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | homalt | 99.8676 | 99.8293 | 99.9058 | 75.1080 | 7603 | 13 | 7426 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | homalt | 99.8689 | 99.8310 | 99.9067 | 75.1753 | 7680 | 13 | 7499 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8611 | 83.3333 | 76.6667 | 90.0332 | 30 | 6 | 23 | 7 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | homalt | 99.7787 | 99.7306 | 99.8269 | 76.3785 | 4072 | 11 | 4037 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8240 | 87.8505 | 98.3945 | 74.4282 | 470 | 65 | 429 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.0693 | 100.0000 | 87.0370 | 48.0769 | 47 | 0 | 47 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | homalt | 96.0632 | 92.4747 | 99.9414 | 32.6716 | 12436 | 1012 | 11931 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | * | 50.0000 | 62.5000 | 41.6667 | 94.5701 | 5 | 3 | 5 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | het | 53.3333 | 100.0000 | 36.3636 | 94.5545 | 4 | 0 | 4 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | homalt | 97.3310 | 95.8665 | 98.8411 | 92.8933 | 603 | 26 | 597 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | homalt | 96.4972 | 94.1257 | 98.9914 | 79.7491 | 689 | 43 | 687 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |