PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26451-26500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.6214 | 93.8278 | 99.5863 | 26.4359 | 1809 | 119 | 1926 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0716 | 89.6700 | 98.9276 | 37.7295 | 625 | 72 | 738 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0333 | 99.7835 | 98.2942 | 63.8675 | 461 | 1 | 461 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7562 | 99.4987 | 98.0247 | 65.4142 | 397 | 2 | 397 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.2190 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5782 | 86.5532 | 99.5046 | 32.0000 | 1577 | 245 | 1607 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.0945 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 97.6000 | 99.4565 | 95.8115 | 95.6223 | 183 | 1 | 183 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 96.8000 | 100.0000 | 93.7984 | 95.8694 | 121 | 0 | 121 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 97.6127 | 99.4595 | 95.8333 | 95.7037 | 184 | 1 | 184 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 96.8254 | 100.0000 | 93.8462 | 95.9286 | 122 | 0 | 122 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | homalt | 64.2857 | 60.0000 | 69.2308 | 98.0168 | 15 | 10 | 18 | 8 | 8 | 100.0000 | |
| anovak-vg | INDEL | * | tech_badpromoters | homalt | 76.1124 | 75.7576 | 76.4706 | 47.6923 | 25 | 8 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 90.2439 | 94.3409 | 0 | 0 | 74 | 8 | 5 | 62.5000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 88.8889 | 0 | 0 | 6 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 87.8788 | 0 | 0 | 4 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 38.4615 | 96.4187 | 0 | 0 | 5 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 95.9322 | 0 | 0 | 4 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6562 | 36.7647 | 76.4706 | 96.4620 | 25 | 43 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.7059 | 73.3333 | 57.8947 | 97.5734 | 11 | 4 | 11 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | het | 80.1909 | 82.7586 | 77.7778 | 92.4051 | 24 | 5 | 28 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | * | 75.3769 | 75.0000 | 75.7576 | 93.5421 | 24 | 8 | 25 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 86.0000 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.1064 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.5172 | 76.8595 | 96.3731 | 89.4304 | 186 | 56 | 186 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.6502 | 77.0161 | 96.4646 | 89.3777 | 191 | 57 | 191 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.8696 | 6.2500 | 41.6667 | 53.8462 | 1 | 15 | 5 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | * | 21.6216 | 15.3846 | 36.3636 | 80.0000 | 4 | 22 | 4 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 34.2857 | 40.0000 | 30.0000 | 77.2727 | 2 | 3 | 3 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2196 | 98.8975 | 99.5437 | 78.3395 | 1525 | 17 | 1527 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8131 | 99.6954 | 99.9311 | 54.3062 | 10147 | 31 | 10148 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9530 | 95.0769 | 98.9045 | 23.1047 | 618 | 32 | 632 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6797 | 97.9695 | 99.4002 | 28.6675 | 1158 | 24 | 1160 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.2308 | 100.0000 | 80.5556 | 83.4862 | 22 | 0 | 29 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.7468 | 88.1250 | 95.6790 | 89.0392 | 141 | 19 | 155 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.1519 | 95.1220 | 87.5000 | 86.9767 | 39 | 2 | 49 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8691 | 93.6803 | 98.1627 | 71.5034 | 252 | 17 | 374 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 88.1188 | 83.9623 | 92.7083 | 97.0525 | 89 | 17 | 89 | 7 | 0 | 0.0000 | |