PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.0579 | 96.6667 | 97.4522 | 75.4879 | 319 | 11 | 306 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.8644 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4441 | 94.9275 | 98.0100 | 72.9839 | 393 | 21 | 394 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 90.3631 | 61 | 0 | 61 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.3608 | 96.0725 | 98.6842 | 78.4703 | 636 | 26 | 600 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4408 | 99.3541 | 99.5277 | 74.9889 | 1692 | 11 | 1686 | 8 | 2 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | * | 92.4528 | 92.4528 | 92.4528 | 95.9634 | 98 | 8 | 98 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | * | 92.9204 | 92.9204 | 92.9204 | 96.3759 | 105 | 8 | 105 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | * | 92.9825 | 92.9825 | 92.9825 | 96.4607 | 106 | 8 | 106 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | * | 97.1910 | 98.8571 | 95.5801 | 93.3013 | 173 | 2 | 173 | 8 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | het | 94.7977 | 98.7952 | 91.1111 | 94.6429 | 82 | 1 | 82 | 8 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8470 | 99.8221 | 99.8718 | 54.9751 | 6173 | 11 | 6232 | 8 | 2 | 25.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8231 | 99.8474 | 99.7988 | 56.7435 | 3925 | 6 | 3969 | 8 | 2 | 25.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.0575 | 88.0952 | 82.2222 | 96.8750 | 37 | 5 | 37 | 8 | 1 | 12.5000 | |
| ckim-dragen | SNP | * | segdup | homalt | 99.9022 | 99.8790 | 99.9255 | 87.7402 | 10730 | 13 | 10730 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8713 | 99.8218 | 99.9208 | 48.8376 | 10084 | 18 | 10093 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1840 | 99.0942 | 99.2740 | 86.3749 | 1094 | 10 | 1094 | 8 | 8 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8338 | 99.8720 | 99.7956 | 30.8168 | 3901 | 5 | 3905 | 8 | 4 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | * | 92.5000 | 94.8718 | 90.2439 | 97.6565 | 74 | 4 | 74 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.7603 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 88.0597 | 96.3106 | 0 | 0 | 59 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 84.3137 | 96.6381 | 0 | 0 | 43 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9542 | 98.7939 | 99.1150 | 59.1505 | 901 | 11 | 896 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2263 | 97.4515 | 99.0136 | 67.7535 | 803 | 21 | 803 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.5297 | 77.9412 | 87.6923 | 96.3565 | 53 | 15 | 57 | 8 | 4 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 77.9661 | 82.1429 | 74.1935 | 94.2056 | 23 | 5 | 23 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 93.5871 | 96.6667 | 90.6977 | 87.0091 | 58 | 2 | 78 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 93.4963 | 92.9688 | 94.0299 | 88.4383 | 119 | 9 | 126 | 8 | 4 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.1463 | 87.3563 | 91.0112 | 82.7519 | 76 | 11 | 81 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 85.9091 | 23 | 0 | 23 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 88.5000 | 61 | 0 | 61 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | * | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 44.4444 | 66.6667 | 33.3333 | 73.9130 | 4 | 2 | 4 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5556 | 100.0000 | 38.4615 | 92.6554 | 6 | 0 | 5 | 8 | 2 | 25.0000 | |
| ciseli-custom | SNP | tv | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1924 | 95.1464 | 99.3283 | 34.1625 | 1137 | 58 | 1183 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6466 | 99.0991 | 98.1982 | 76.5823 | 440 | 4 | 436 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 11.1111 | 98.2387 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | HG002complexvar | het | 56.6038 | 50.0000 | 65.2174 | 92.6045 | 2 | 2 | 15 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.8947 | 97.7778 | 0 | 0 | 11 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 11.1111 | 96.7273 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 57.8947 | 97.7778 | 0 | 0 | 11 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 62.0690 | 75.0000 | 52.9412 | 92.5764 | 9 | 3 | 9 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |