PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26251-26300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6448 | 99.6448 | 99.6448 | 54.2090 | 2244 | 8 | 2244 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5063 | 86.6667 | 94.7020 | 88.3308 | 143 | 22 | 143 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.7619 | 99.6130 | 99.9113 | 61.1747 | 9008 | 35 | 9008 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.7609 | 99.6093 | 99.9129 | 63.7805 | 9178 | 36 | 9178 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.7631 | 99.6130 | 99.9137 | 63.7862 | 9266 | 36 | 9266 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | * | 97.2074 | 95.5556 | 98.9175 | 91.4259 | 731 | 34 | 731 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 69.7987 | 80.0000 | 61.9048 | 99.5263 | 16 | 4 | 13 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 67.1186 | 91.6667 | 52.9412 | 99.4967 | 11 | 1 | 9 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 91.1504 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 11.1111 | 89.2857 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0241 | 77.2727 | 82.9787 | 93.9040 | 51 | 15 | 39 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7441 | 99.6928 | 99.7955 | 25.9231 | 3894 | 12 | 3904 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | homalt | 50.0000 | 44.0000 | 57.8947 | 94.7368 | 11 | 14 | 11 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | het | 48.4429 | 33.1754 | 89.7436 | 93.5537 | 70 | 141 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 70.0000 | 63.6364 | 93.7500 | 14 | 6 | 14 | 8 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | HG002compoundhet | het | 99.7327 | 99.6362 | 99.8294 | 55.7255 | 4656 | 17 | 4682 | 8 | 3 | 37.5000 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7100 | 99.6412 | 99.7789 | 75.9521 | 3610 | 13 | 3610 | 8 | 3 | 37.5000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7955 | 94.3933 | 99.3232 | 30.5115 | 1128 | 67 | 1174 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 85.4504 | 504 | 5 | 504 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.8969 | 94.3465 | 99.5891 | 25.8850 | 1819 | 109 | 1939 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.7052 | 90.8178 | 98.9404 | 37.4482 | 633 | 64 | 747 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0078 | 98.8530 | 99.1632 | 72.8794 | 948 | 11 | 948 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | D16_PLUS | segdup | het | 89.7436 | 100.0000 | 81.3953 | 97.3292 | 37 | 0 | 35 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.3918 | 87.9802 | 99.5128 | 30.5121 | 1603 | 219 | 1634 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4812 | 99.4812 | 99.4812 | 78.2296 | 1534 | 8 | 1534 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.2359 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 94.7867 | 97.0874 | 92.5926 | 91.6731 | 100 | 3 | 100 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.9134 | 98.3333 | 88.0597 | 92.8875 | 59 | 1 | 59 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5100 | 96.3492 | 98.6992 | 65.8143 | 607 | 23 | 607 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 97.9368 | 56 | 4 | 56 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 91.1765 | 93.9394 | 88.5714 | 98.0474 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 91.1765 | 93.9394 | 88.5714 | 98.1096 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0504 | 98.6372 | 99.4670 | 77.6637 | 1520 | 21 | 1493 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | ti | map_l100_m1_e0 | homalt | 84.4316 | 73.0902 | 99.9391 | 65.0795 | 13127 | 4833 | 13127 | 8 | 7 | 87.5000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1730 | 98.8786 | 99.4691 | 69.5432 | 1499 | 17 | 1499 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7854 | 98.3871 | 99.1870 | 71.7404 | 976 | 16 | 976 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1238 | 99.1238 | 99.1238 | 89.4268 | 905 | 8 | 905 | 8 | 7 | 87.5000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7825 | 99.7971 | 99.7680 | 39.6992 | 3443 | 7 | 3440 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8130 | 100.0000 | 99.6267 | 42.4234 | 2138 | 0 | 2135 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 67.2694 | 51.8106 | 95.8763 | 44.7293 | 186 | 173 | 186 | 8 | 7 | 87.5000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | het | 78.6935 | 65.7581 | 97.9644 | 91.7001 | 386 | 201 | 385 | 8 | 2 | 25.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | * | 83.3333 | 92.5926 | 75.7576 | 97.6035 | 25 | 2 | 25 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4526 | 86.3337 | 99.5050 | 31.4964 | 1573 | 249 | 1608 | 8 | 8 | 100.0000 | |