PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26151-26200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 82.7119 | 502 | 7 | 502 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9761 | 99.0437 | 98.9086 | 84.6202 | 725 | 7 | 725 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | homalt | 98.9515 | 98.9515 | 98.9515 | 85.7755 | 755 | 8 | 755 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | homalt | 98.9664 | 98.9664 | 98.9664 | 85.9247 | 766 | 8 | 766 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | hetalt | 63.8503 | 47.1288 | 98.9624 | 49.3430 | 911 | 1022 | 763 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.7991 | 47.0741 | 98.9583 | 49.3404 | 909 | 1022 | 760 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 63.7991 | 47.0741 | 98.9583 | 49.3404 | 909 | 1022 | 760 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4104 | 94.8905 | 97.9798 | 71.8750 | 390 | 21 | 388 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.5169 | 66.3764 | 99.1444 | 42.1411 | 991 | 502 | 927 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5453 | 96.1290 | 94.9686 | 82.4503 | 149 | 6 | 151 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.8333 | 95.8333 | 95.8333 | 44.3478 | 184 | 8 | 184 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.8820 | 73.9003 | 96.9811 | 55.3120 | 252 | 89 | 257 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.5480 | 74.7368 | 97.3244 | 58.8721 | 284 | 96 | 291 | 8 | 7 | 87.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 74.1573 | 73.3333 | 75.0000 | 82.9787 | 11 | 4 | 24 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 75.1899 | 73.3333 | 77.1429 | 83.7209 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 75.1899 | 73.3333 | 77.1429 | 84.1629 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7805 | 99.7685 | 99.7926 | 58.3234 | 3878 | 9 | 3850 | 8 | 7 | 87.5000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5713 | 99.3652 | 99.7783 | 74.4113 | 3600 | 23 | 3600 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2442 | 98.7151 | 99.7789 | 49.7012 | 3611 | 47 | 3611 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | homalt | 98.6859 | 98.4273 | 98.9460 | 85.1526 | 751 | 12 | 751 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | homalt | 98.7047 | 98.4496 | 98.9610 | 85.2744 | 762 | 12 | 762 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | * | 91.8239 | 93.5897 | 90.1235 | 97.0513 | 73 | 5 | 73 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.0235 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5532 | 95.7934 | 99.3789 | 69.8925 | 1298 | 57 | 1280 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7268 | 93.0195 | 98.5965 | 56.9811 | 573 | 43 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0959 | 99.3912 | 98.8024 | 75.4321 | 653 | 4 | 660 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.3716 | 91.7119 | 99.3355 | 36.2626 | 1184 | 107 | 1196 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6710 | 96.6154 | 98.7500 | 34.0206 | 628 | 22 | 632 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.0968 | 96.9379 | 99.2838 | 80.1281 | 1108 | 35 | 1109 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9023 | 96.8831 | 98.9432 | 78.1087 | 746 | 24 | 749 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5396 | 92.6910 | 98.5689 | 43.9880 | 558 | 44 | 551 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | * | 97.4111 | 96.4637 | 98.3773 | 78.8139 | 491 | 18 | 485 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | het | 69.4745 | 61.7021 | 79.4872 | 79.6875 | 29 | 18 | 31 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.2840 | 82.6087 | 99.5316 | 37.2520 | 1729 | 364 | 1700 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9728 | 84.5626 | 98.4344 | 65.7965 | 493 | 90 | 503 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 96.1107 | 93.3110 | 99.0836 | 51.0924 | 837 | 60 | 865 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3613 | 98.9539 | 99.7720 | 65.8757 | 3500 | 37 | 3501 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4163 | 99.1347 | 99.6996 | 67.2044 | 2635 | 23 | 2655 | 8 | 4 | 50.0000 | |