PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26051-26100 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9392 | 95.2922 | 98.6441 | 64.3073 | 587 | 29 | 582 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 90.8046 | 90.8046 | 90.8046 | 92.7980 | 79 | 8 | 79 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | het | 95.9620 | 95.7346 | 96.1905 | 96.0667 | 202 | 9 | 202 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.6348 | 77.0701 | 93.8462 | 62.2093 | 121 | 36 | 122 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.5572 | 58.5593 | 98.8827 | 38.1693 | 756 | 535 | 708 | 8 | 8 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9006 | 93.9173 | 97.9695 | 71.5112 | 386 | 25 | 386 | 8 | 8 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 78.8405 | 65.4387 | 99.1453 | 42.4354 | 977 | 516 | 928 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | het | 96.2963 | 96.5347 | 96.0591 | 91.1354 | 195 | 7 | 195 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | homalt | 99.4012 | 99.4863 | 99.3162 | 80.2231 | 1162 | 6 | 1162 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4599 | 98.5626 | 98.3573 | 64.0590 | 480 | 7 | 479 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 65.1258 | 48.6464 | 98.4906 | 44.0338 | 575 | 607 | 522 | 8 | 6 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 89.9158 | 83.5821 | 97.2881 | 65.1300 | 280 | 55 | 287 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.8820 | 73.9003 | 96.9811 | 55.3872 | 252 | 89 | 257 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 85.4542 | 76.7025 | 96.4602 | 65.3905 | 214 | 65 | 218 | 8 | 7 | 87.5000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.2963 | 95.7364 | 96.8627 | 87.5245 | 247 | 11 | 247 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1832 | 95.4545 | 96.9231 | 88.0624 | 252 | 12 | 252 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1468 | 95.2727 | 97.0370 | 87.9086 | 262 | 13 | 262 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | het | 97.6859 | 98.2143 | 97.1631 | 87.7445 | 275 | 5 | 274 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.9256 | 98.4721 | 99.3832 | 67.6397 | 1289 | 20 | 1289 | 8 | 8 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 91.4604 | 61 | 0 | 61 | 8 | 7 | 87.5000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6228 | 98.7109 | 98.5348 | 85.9278 | 536 | 7 | 538 | 8 | 3 | 37.5000 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | homalt | 99.3242 | 98.8506 | 99.8025 | 74.1808 | 4042 | 47 | 4042 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l100_m0_e0 | homalt | 99.5677 | 99.2411 | 99.8964 | 59.9180 | 7715 | 59 | 7715 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.5618 | 99.2357 | 99.8901 | 68.6615 | 7271 | 56 | 7271 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.5587 | 99.2253 | 99.8942 | 70.9853 | 7557 | 59 | 7557 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3666 | 99.2968 | 99.4366 | 88.7015 | 1412 | 10 | 1412 | 8 | 7 | 87.5000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2892 | 99.4524 | 99.1266 | 89.6532 | 908 | 5 | 908 | 8 | 7 | 87.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.6791 | 99.4465 | 99.9128 | 62.0923 | 9163 | 51 | 9163 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.6821 | 99.4517 | 99.9136 | 62.0828 | 9251 | 51 | 9251 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.5582 | 99.2521 | 99.8662 | 67.1591 | 5972 | 45 | 5972 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.6157 | 46.9649 | 98.5586 | 37.4295 | 588 | 664 | 547 | 8 | 6 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | het | 95.9427 | 95.7143 | 96.1722 | 95.9846 | 201 | 9 | 201 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.6943 | 72.8549 | 98.3229 | 36.6534 | 467 | 174 | 469 | 8 | 6 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.4670 | 80.5556 | 95.6757 | 56.8765 | 174 | 42 | 177 | 8 | 7 | 87.5000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.9868 | 78.6885 | 92.3810 | 59.6154 | 96 | 26 | 97 | 8 | 3 | 37.5000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2106 | 96.5536 | 99.9255 | 53.9316 | 10702 | 382 | 10737 | 8 | 3 | 37.5000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.4799 | 95.1964 | 99.8756 | 26.6788 | 6421 | 324 | 6423 | 8 | 7 | 87.5000 | |
| ckim-isaac | SNP | * | segdup | het | 98.3305 | 96.7604 | 99.9523 | 88.4697 | 16756 | 561 | 16758 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9558 | 94.9708 | 99.0256 | 50.8383 | 812 | 43 | 813 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | * | 67.9069 | 51.4704 | 99.7662 | 76.9939 | 3413 | 3218 | 3413 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | het | 71.3076 | 55.5101 | 99.6736 | 79.7505 | 2443 | 1958 | 2443 | 8 | 1 | 12.5000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7955 | 94.3933 | 99.3232 | 30.5115 | 1128 | 67 | 1174 | 8 | 8 | 100.0000 | |