PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25901-25950 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3889 | 99.0959 | 99.6837 | 47.2135 | 2521 | 23 | 2521 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0934 | 87.8423 | 99.0123 | 88.6586 | 802 | 111 | 802 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.7738 | 84.9582 | 97.4441 | 50.1592 | 305 | 54 | 305 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | homalt | 98.4283 | 98.4283 | 98.4283 | 84.0788 | 501 | 8 | 501 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 90.6567 | 83.2469 | 99.5146 | 24.3343 | 1605 | 323 | 1640 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3066 | 98.4234 | 98.1900 | 73.3092 | 437 | 7 | 434 | 8 | 4 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9214 | 99.9214 | 99.9214 | 54.3038 | 10170 | 8 | 10169 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7177 | 99.6321 | 99.8035 | 42.5670 | 4062 | 15 | 4064 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.7895 | 92.0000 | 89.6104 | 65.7778 | 69 | 6 | 69 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0493 | 99.4792 | 98.6231 | 67.7222 | 573 | 3 | 573 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | hetalt | 91.5838 | 84.7950 | 99.5541 | 49.0051 | 1779 | 319 | 1786 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.6528 | 90.4762 | 94.9367 | 73.7977 | 152 | 16 | 150 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | hetalt | 96.6553 | 93.5940 | 99.9237 | 57.4617 | 10461 | 716 | 10476 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6989 | 94.3463 | 97.0909 | 72.3061 | 267 | 16 | 267 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.9511 | 85.8736 | 96.6667 | 77.4436 | 231 | 38 | 232 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.1543 | 97.7901 | 98.5213 | 84.3687 | 531 | 12 | 533 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.1972 | 97.4074 | 99.0000 | 84.3750 | 789 | 21 | 792 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.4753 | 97.8996 | 99.0577 | 86.5940 | 839 | 18 | 841 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.4982 | 97.9310 | 99.0719 | 86.7466 | 852 | 18 | 854 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.7187 | 94.7933 | 98.7241 | 70.9453 | 619 | 34 | 619 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 93.6827 | 88.3154 | 99.7447 | 41.6713 | 3114 | 412 | 3126 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.1212 | 93.8272 | 90.4762 | 75.3666 | 76 | 5 | 76 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.8940 | 87.0028 | 99.6409 | 34.1996 | 2209 | 330 | 2220 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.8172 | 88.6758 | 99.5914 | 32.3428 | 1942 | 248 | 1950 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 92.8925 | 86.9894 | 99.6550 | 36.0629 | 2300 | 344 | 2311 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 93.6827 | 88.3154 | 99.7447 | 41.6713 | 3114 | 412 | 3126 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | * | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1682 | 99.4444 | 98.8935 | 86.9353 | 716 | 4 | 715 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8665 | 99.8517 | 99.8813 | 39.6598 | 6734 | 10 | 6732 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e0 | homalt | 98.9359 | 98.3419 | 99.5370 | 87.6280 | 1720 | 29 | 1720 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5262 | 99.6838 | 99.3691 | 86.9359 | 1261 | 4 | 1260 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3720 | 99.7481 | 98.9987 | 88.0853 | 792 | 2 | 791 | 8 | 6 | 75.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | homalt | 99.3593 | 99.6495 | 99.0708 | 87.1531 | 853 | 3 | 853 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | homalt | 99.3610 | 99.5731 | 99.1498 | 88.0265 | 933 | 4 | 933 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | homalt | 99.3671 | 99.5772 | 99.1579 | 88.1116 | 942 | 4 | 942 | 8 | 4 | 50.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8937 | 99.8584 | 99.9291 | 56.1359 | 11280 | 16 | 11280 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7214 | 99.8141 | 99.6289 | 46.6996 | 2148 | 4 | 2148 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | homalt | 98.9071 | 98.9071 | 98.9071 | 85.4009 | 724 | 8 | 724 | 8 | 4 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4772 | 98.5772 | 98.3773 | 89.0274 | 485 | 7 | 485 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | * | segdup | homalt | 99.3240 | 99.4792 | 99.1693 | 93.4858 | 955 | 5 | 955 | 8 | 8 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3413 | 97.5610 | 93.2203 | 88.0081 | 160 | 4 | 110 | 8 | 6 | 75.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9263 | 97.7011 | 98.1524 | 69.9306 | 425 | 10 | 425 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7556 | 99.4924 | 96.0784 | 58.9537 | 196 | 1 | 196 | 8 | 8 | 100.0000 | |