PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25151-25200 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.8581 | 70.0143 | 98.5246 | 47.8186 | 488 | 209 | 601 | 9 | 7 | 77.7778 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | het | 81.7401 | 69.9725 | 98.2659 | 88.4897 | 508 | 218 | 510 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | het | 82.3461 | 70.8115 | 98.3696 | 88.9842 | 541 | 223 | 543 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | het | 82.2394 | 70.6494 | 98.3784 | 89.0597 | 544 | 226 | 546 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.6061 | 79.5775 | 92.6230 | 28.6550 | 113 | 29 | 113 | 9 | 9 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 71.6186 | 79.1667 | 65.3846 | 43.4783 | 19 | 5 | 17 | 9 | 9 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2135 | 67.4157 | 93.1298 | 72.7651 | 120 | 58 | 122 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 78.0231 | 64.9737 | 97.6316 | 49.3333 | 371 | 200 | 371 | 9 | 8 | 88.8889 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.3899 | 73.5955 | 93.5714 | 59.8854 | 131 | 47 | 131 | 9 | 3 | 33.3333 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1899 | 99.0155 | 99.3649 | 88.4872 | 1408 | 14 | 1408 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.5024 | 95.8159 | 99.2494 | 33.8300 | 1145 | 50 | 1190 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8867 | 98.9515 | 98.8220 | 87.0968 | 755 | 8 | 755 | 9 | 4 | 44.4444 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.9025 | 98.9664 | 98.8387 | 87.1943 | 766 | 8 | 766 | 9 | 4 | 44.4444 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | het | 89.2857 | 94.3396 | 84.7458 | 98.0281 | 50 | 3 | 50 | 9 | 1 | 11.1111 | |
| dgrover-gatk | INDEL | * | segdup | homalt | 99.4292 | 99.7917 | 99.0693 | 93.7134 | 958 | 2 | 958 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.4946 | 92.1026 | 99.1461 | 40.7199 | 898 | 77 | 1045 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.2296 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 80.6452 | 89.2857 | 73.5294 | 96.2842 | 25 | 3 | 25 | 9 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9517 | 89.0231 | 99.4582 | 32.2317 | 1622 | 200 | 1652 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8747 | 99.8104 | 99.9390 | 55.0186 | 14742 | 28 | 14744 | 9 | 4 | 44.4444 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9362 | 99.9607 | 99.9116 | 54.3466 | 10174 | 4 | 10174 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4236 | 97.9239 | 96.9283 | 92.3837 | 283 | 6 | 284 | 9 | 1 | 11.1111 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.9195 | 88.9930 | 99.4234 | 30.1878 | 1520 | 188 | 1552 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | * | 98.3425 | 98.3425 | 98.3425 | 85.3204 | 534 | 9 | 534 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3218 | 98.4190 | 98.2249 | 89.3800 | 498 | 8 | 498 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3638 | 98.4586 | 98.2692 | 90.4535 | 511 | 8 | 511 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4008 | 98.4934 | 98.3083 | 90.5304 | 523 | 8 | 523 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.5311 | 89.0796 | 98.4509 | 45.0331 | 571 | 70 | 572 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | * | 94.0978 | 91.4754 | 96.8750 | 81.5974 | 279 | 26 | 279 | 9 | 8 | 88.8889 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.7759 | 99.6299 | 99.9223 | 61.7548 | 11577 | 43 | 11577 | 9 | 8 | 88.8889 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | * | 98.2288 | 97.1533 | 99.3284 | 92.7300 | 1331 | 39 | 1331 | 9 | 3 | 33.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7911 | 98.1976 | 99.3919 | 80.6257 | 1471 | 27 | 1471 | 9 | 6 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2342 | 98.9813 | 99.4883 | 56.1128 | 1749 | 18 | 1750 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.7273 | 85.2018 | 0 | 0 | 24 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 92.4242 | 0 | 0 | 6 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 47.0588 | 94.0351 | 0 | 0 | 8 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 52.6316 | 93.9297 | 0 | 0 | 10 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 95.7627 | 0 | 0 | 36 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.3516 | 98.3516 | 98.3516 | 75.3499 | 537 | 9 | 537 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.6992 | 74.6479 | 85.4839 | 48.7603 | 53 | 18 | 53 | 9 | 7 | 77.7778 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5398 | 97.6812 | 97.3988 | 87.9694 | 337 | 8 | 337 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7071 | 96.5398 | 96.8750 | 91.2489 | 279 | 10 | 279 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.3305 | 80.0000 | 89.1566 | 86.2583 | 76 | 19 | 74 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.4254 | 74.7368 | 97.0000 | 58.7912 | 284 | 96 | 291 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.7209 | 87.8049 | 80.0000 | 82.0000 | 36 | 5 | 36 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.1064 | 88.8889 | 81.6327 | 79.4118 | 40 | 5 | 40 | 9 | 5 | 55.5556 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4400 | 98.0595 | 98.8235 | 76.0788 | 758 | 15 | 756 | 9 | 1 | 11.1111 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 34.9312 | 22.1925 | 82.0000 | 62.4060 | 83 | 291 | 41 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 25.7312 | 15.1242 | 86.1538 | 28.5714 | 67 | 376 | 56 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | homalt | 0.6437 | 0.3236 | 59.0909 | 48.8372 | 1 | 308 | 13 | 9 | 6 | 66.6667 | |