PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24651-24700 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | segdup | homalt | 99.2731 | 99.5833 | 98.9648 | 93.2239 | 956 | 4 | 956 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8889 | 97.7778 | 81.4815 | 79.3103 | 44 | 1 | 44 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1778 | 97.6714 | 98.6894 | 75.0164 | 755 | 18 | 753 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0226 | 86.5506 | 98.2332 | 38.6117 | 547 | 85 | 556 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.0508 | 90.1716 | 98.2788 | 45.2919 | 578 | 63 | 571 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6457 | 99.4290 | 99.8635 | 32.0123 | 7313 | 42 | 7315 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.6765 | 99.4406 | 99.9135 | 60.1441 | 11555 | 65 | 11555 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1773 | 98.9247 | 99.4312 | 56.1924 | 1748 | 19 | 1748 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 60.0000 | 0 | 0 | 0 | 10 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 41.1765 | 91.0526 | 0 | 0 | 7 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | het | 61.5385 | 100.0000 | 44.4444 | 68.4211 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 80.9673 | 71.3450 | 93.5897 | 97.5788 | 122 | 49 | 146 | 10 | 9 | 90.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 76.2838 | 63.1068 | 96.4158 | 95.2136 | 195 | 114 | 269 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 76.0534 | 62.7760 | 96.4539 | 95.2493 | 199 | 118 | 272 | 10 | 6 | 60.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 82.8388 | 70.8349 | 99.7415 | 27.5927 | 3852 | 1586 | 3858 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.3750 | 84.3750 | 84.3750 | 86.7220 | 54 | 10 | 54 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | homalt | 85.0746 | 85.0746 | 85.0746 | 87.3106 | 57 | 10 | 57 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | het | 71.5939 | 64.0625 | 81.1321 | 82.2742 | 41 | 23 | 43 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | het | 73.6724 | 66.1972 | 83.0508 | 83.1909 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | het | 73.6724 | 66.1972 | 83.0508 | 83.7912 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 83.7918 | 78.7037 | 89.5833 | 87.3850 | 85 | 23 | 86 | 10 | 6 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.8059 | 98.5000 | 95.1691 | 58.8469 | 197 | 3 | 197 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2337 | 97.2344 | 99.2537 | 66.3739 | 1336 | 38 | 1330 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 16.6667 | 100.0000 | 9.0909 | 90.8333 | 1 | 0 | 1 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | homalt | 81.7259 | 76.6667 | 87.5000 | 82.1029 | 69 | 21 | 70 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | het | 35.3963 | 21.6467 | 97.0238 | 84.3210 | 326 | 1180 | 326 | 10 | 1 | 10.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7510 | 97.9167 | 99.5997 | 47.1770 | 2491 | 53 | 2488 | 10 | 1 | 10.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0251 | 98.7500 | 99.3017 | 67.9499 | 1422 | 18 | 1422 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0584 | 100.0000 | 98.1343 | 71.2755 | 525 | 0 | 526 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1923 | 92.5234 | 98.0198 | 73.2238 | 495 | 40 | 495 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.6290 | 90.1961 | 83.3333 | 89.3238 | 46 | 5 | 50 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3931 | 96.8880 | 97.9036 | 87.3876 | 467 | 15 | 467 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5562 | 97.0817 | 98.0354 | 87.9212 | 499 | 15 | 499 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4952 | 96.9349 | 98.0620 | 87.9355 | 506 | 16 | 506 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3190 | 98.8713 | 97.7728 | 36.2216 | 438 | 5 | 439 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | * | 92.0422 | 93.2039 | 90.9091 | 88.2101 | 96 | 7 | 100 | 10 | 1 | 10.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 91.4293 | 90.6250 | 92.2481 | 89.5037 | 116 | 12 | 119 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.1961 | 86.1111 | 90.3846 | 84.8175 | 93 | 15 | 94 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |