PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24101-24150 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1986 | 94.7313 | 99.7979 | 56.1836 | 5430 | 302 | 5431 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.0718 | 98.1584 | 97.9853 | 81.8544 | 533 | 10 | 535 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 96.7902 | 97.0968 | 96.4856 | 86.1688 | 301 | 9 | 302 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4247 | 97.1193 | 97.7320 | 84.0145 | 472 | 14 | 474 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4818 | 97.1831 | 97.7823 | 85.5182 | 483 | 14 | 485 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | het | 97.5364 | 97.2441 | 97.8304 | 85.6618 | 494 | 14 | 496 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3783 | 86.4597 | 99.1667 | 88.2132 | 1309 | 205 | 1309 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7912 | 95.8467 | 99.8163 | 67.9237 | 5977 | 259 | 5977 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5910 | 99.3338 | 99.8496 | 31.5262 | 7306 | 49 | 7302 | 11 | 3 | 27.2727 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | homalt | 99.7198 | 99.5353 | 99.9050 | 58.6521 | 11566 | 54 | 11566 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | homalt | 99.7067 | 99.5121 | 99.9020 | 67.3803 | 11218 | 55 | 11218 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | homalt | 99.7131 | 99.5213 | 99.9056 | 69.8863 | 11643 | 56 | 11643 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | homalt | 99.7077 | 99.5096 | 99.9066 | 69.9014 | 11769 | 58 | 11769 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | homalt | 99.9758 | 99.9632 | 99.9884 | 22.8157 | 95076 | 35 | 95070 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | D16_PLUS | * | hetalt | 90.5247 | 83.1350 | 99.3563 | 34.4206 | 1607 | 326 | 1698 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.5141 | 83.1176 | 99.3556 | 34.2956 | 1605 | 326 | 1696 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7784 | 94.5312 | 97.0588 | 82.6611 | 363 | 21 | 363 | 11 | 5 | 45.4545 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.9862 | 93.5323 | 94.4444 | 85.3550 | 188 | 13 | 187 | 11 | 5 | 45.4545 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.5141 | 83.1176 | 99.3556 | 34.2956 | 1605 | 326 | 1696 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5630 | 99.4272 | 99.6991 | 49.6904 | 3645 | 21 | 3645 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.7076 | 97.2927 | 98.1261 | 84.3425 | 575 | 16 | 576 | 11 | 2 | 18.1818 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | het | 94.6154 | 97.6190 | 91.7910 | 88.3173 | 123 | 3 | 123 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.1825 | 84.1463 | 94.8598 | 82.1963 | 207 | 39 | 203 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1930 | 99.1930 | 99.1930 | 76.9218 | 1352 | 11 | 1352 | 11 | 7 | 63.6364 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.4200 | 94.0678 | 96.8116 | 67.6966 | 333 | 21 | 334 | 11 | 10 | 90.9091 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | homalt | 98.6481 | 97.7670 | 99.5453 | 86.6597 | 2408 | 55 | 2408 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7622 | 99.7519 | 99.7725 | 68.8442 | 4825 | 12 | 4825 | 11 | 7 | 63.6364 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8882 | 99.8789 | 99.8975 | 38.7986 | 10719 | 13 | 10717 | 11 | 5 | 45.4545 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | homalt | 99.7491 | 99.8229 | 99.6753 | 42.8668 | 3382 | 6 | 3377 | 11 | 9 | 81.8182 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 59.2593 | 100.0000 | 42.1053 | 67.7966 | 8 | 0 | 8 | 11 | 11 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.7495 | 97.6834 | 95.8333 | 56.5789 | 253 | 6 | 253 | 11 | 10 | 90.9091 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7225 | 97.5369 | 97.9087 | 80.2849 | 594 | 15 | 515 | 11 | 8 | 72.7273 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 98.2480 | 98.7552 | 97.7459 | 87.7633 | 476 | 6 | 477 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 98.3564 | 98.8327 | 97.8846 | 88.2671 | 508 | 6 | 509 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 98.2844 | 98.6590 | 97.9127 | 88.3097 | 515 | 7 | 516 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.6489 | 94.8485 | 96.4630 | 73.3505 | 313 | 17 | 300 | 11 | 5 | 45.4545 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 74.1746 | 87.2340 | 64.5161 | 91.9481 | 41 | 6 | 20 | 11 | 6 | 54.5455 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5344 | 93.5417 | 97.6139 | 77.7831 | 449 | 31 | 450 | 11 | 7 | 63.6364 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9133 | 99.8812 | 99.9455 | 56.3725 | 20175 | 24 | 20175 | 11 | 7 | 63.6364 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0950 | 99.1848 | 99.0054 | 86.2506 | 1095 | 9 | 1095 | 11 | 4 | 36.3636 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8235 | 99.1667 | 98.4828 | 87.3627 | 714 | 6 | 714 | 11 | 4 | 36.3636 | |
| jli-custom | SNP | ti | map_l100_m1_e0 | homalt | 99.7965 | 99.6548 | 99.9386 | 56.4067 | 17898 | 62 | 17898 | 11 | 11 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | homalt | 99.8004 | 99.6614 | 99.9398 | 59.0453 | 18247 | 62 | 18247 | 11 | 11 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e1 | homalt | 99.7997 | 99.6593 | 99.9404 | 59.0260 | 18431 | 63 | 18431 | 11 | 11 | 100.0000 | |
| jli-custom | SNP | tv | func_cds | * | 99.8629 | 99.9771 | 99.7489 | 28.1332 | 4370 | 1 | 4370 | 11 | 0 | 0.0000 | |
| jli-custom | SNP | tv | func_cds | het | 99.7746 | 99.9624 | 99.5876 | 29.8712 | 2656 | 1 | 2656 | 11 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9059 | 99.0142 | 98.7978 | 89.1921 | 904 | 9 | 904 | 11 | 6 | 54.5455 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | * | 96.8085 | 95.1634 | 98.5115 | 89.9973 | 728 | 37 | 728 | 11 | 5 | 45.4545 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5356 | 98.2273 | 98.8458 | 72.2319 | 942 | 17 | 942 | 11 | 9 | 81.8182 | |