PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23701-23750 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2924 | 99.2063 | 99.3785 | 88.6959 | 1750 | 14 | 1759 | 11 | 11 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7368 | 98.6330 | 98.8409 | 85.1301 | 938 | 13 | 938 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | homalt | 98.8142 | 99.3641 | 98.2704 | 89.0250 | 625 | 4 | 625 | 11 | 8 | 72.7273 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7312 | 99.8094 | 99.6531 | 71.4710 | 3142 | 6 | 3160 | 11 | 8 | 72.7273 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | homalt | 99.3100 | 99.0221 | 99.5996 | 68.7592 | 2734 | 27 | 2736 | 11 | 10 | 90.9091 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7253 | 99.7681 | 99.6824 | 38.1649 | 3442 | 8 | 3453 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6745 | 99.8597 | 99.4900 | 40.5130 | 2135 | 3 | 2146 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.6908 | 99.5935 | 97.8044 | 62.6398 | 490 | 2 | 490 | 11 | 9 | 81.8182 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.1677 | 99.2070 | 99.1284 | 85.1721 | 1251 | 10 | 1251 | 11 | 6 | 54.5455 | |
| ckim-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.1806 | 99.2194 | 99.1420 | 85.1980 | 1271 | 10 | 1271 | 11 | 6 | 54.5455 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 96.2700 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9827 | 89.0533 | 99.4898 | 29.9773 | 2107 | 259 | 2145 | 11 | 11 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3823 | 95.0803 | 99.7986 | 57.9620 | 5450 | 282 | 5451 | 11 | 9 | 81.8182 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 95.8387 | 97.7273 | 94.0217 | 94.6543 | 172 | 4 | 173 | 11 | 2 | 18.1818 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9984 | 97.5741 | 98.4263 | 73.5027 | 724 | 18 | 688 | 11 | 5 | 45.4545 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.5081 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| ckim-gatk | SNP | * | HG002compoundhet | homalt | 99.4644 | 99.0354 | 99.8971 | 35.0629 | 10678 | 104 | 10677 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8455 | 99.9742 | 99.7171 | 60.4476 | 3877 | 1 | 3877 | 11 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7800 | 100.0000 | 99.5609 | 62.1372 | 2494 | 0 | 2494 | 11 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4505 | 99.3666 | 99.5347 | 87.4509 | 2353 | 15 | 2353 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | * | map_l100_m2_e0 | homalt | 83.9525 | 72.3722 | 99.9448 | 68.4557 | 19919 | 7604 | 19919 | 11 | 7 | 63.6364 | |
| ckim-gatk | SNP | * | map_l100_m2_e1 | homalt | 84.0675 | 72.5428 | 99.9455 | 68.3772 | 20164 | 7632 | 20164 | 11 | 7 | 63.6364 | |
| ckim-gatk | SNP | tv | HG002complexvar | homalt | 99.2138 | 98.4513 | 99.9883 | 23.0317 | 93638 | 1473 | 93624 | 11 | 8 | 72.7273 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6925 | 99.7409 | 99.6441 | 69.2652 | 3080 | 8 | 3080 | 11 | 9 | 81.8182 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5118 | 70.0599 | 91.9118 | 65.9148 | 117 | 50 | 125 | 11 | 10 | 90.9091 | |
| ckim-isaac | INDEL | * | map_siren | homalt | 82.0615 | 69.8682 | 99.4105 | 72.7551 | 1855 | 800 | 1855 | 11 | 7 | 63.6364 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.4848 | 90.6250 | 92.3611 | 89.3727 | 145 | 15 | 133 | 11 | 2 | 18.1818 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.6455 | 92.3077 | 95.0226 | 80.9154 | 228 | 19 | 210 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7048 | 99.4757 | 99.9349 | 66.5658 | 16886 | 89 | 16886 | 11 | 11 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7048 | 99.4757 | 99.9349 | 66.5658 | 16886 | 89 | 16886 | 11 | 11 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.5442 | 97.5639 | 99.5443 | 85.9993 | 2403 | 60 | 2403 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | homalt | 98.6471 | 97.7290 | 99.5827 | 86.9731 | 2625 | 61 | 2625 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | homalt | 98.6256 | 97.6821 | 99.5874 | 87.0236 | 2655 | 63 | 2655 | 11 | 8 | 72.7273 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.2298 | 98.5695 | 99.8991 | 63.8084 | 10887 | 158 | 10887 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.2423 | 98.5913 | 99.9019 | 66.3888 | 11198 | 160 | 11198 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | homalt | 99.2489 | 98.6036 | 99.9027 | 66.4043 | 11298 | 160 | 11298 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.9076 | 98.5488 | 99.2691 | 69.3358 | 1494 | 22 | 1494 | 11 | 2 | 18.1818 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.4304 | 97.9839 | 98.8810 | 71.7122 | 972 | 20 | 972 | 11 | 2 | 18.1818 | |
| jlack-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.3888 | 98.9052 | 99.8772 | 60.2177 | 8944 | 99 | 8944 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.4002 | 98.9255 | 99.8795 | 62.7206 | 9115 | 99 | 9115 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.4059 | 98.9357 | 99.8806 | 62.6933 | 9203 | 99 | 9203 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.1843 | 98.5666 | 99.8099 | 65.3618 | 5776 | 84 | 5776 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.1889 | 98.5707 | 99.8149 | 67.8533 | 5931 | 86 | 5931 | 11 | 7 | 63.6364 | |
| jlack-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.1882 | 98.5677 | 99.8166 | 67.8547 | 5987 | 87 | 5987 | 11 | 7 | 63.6364 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9292 | 99.9557 | 99.9027 | 55.9852 | 11291 | 5 | 11292 | 11 | 11 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | * | 96.2233 | 96.0656 | 96.3816 | 95.2500 | 293 | 12 | 293 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | * | 96.5414 | 96.3964 | 96.6867 | 95.6252 | 321 | 12 | 321 | 11 | 4 | 36.3636 | |