PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23501-23550 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | het | 60.2871 | 44.0559 | 95.4545 | 98.5526 | 252 | 320 | 252 | 12 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5915 | 99.5935 | 97.6096 | 62.3406 | 490 | 2 | 490 | 12 | 11 | 91.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2366 | 99.7807 | 98.6985 | 70.3346 | 910 | 2 | 910 | 12 | 9 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.2611 | 93.7500 | 78.1818 | 96.1295 | 45 | 3 | 43 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.0819 | 94.1176 | 79.3103 | 96.0137 | 48 | 3 | 46 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.3859 | 89.8140 | 99.4483 | 30.8646 | 2125 | 241 | 2163 | 12 | 11 | 91.6667 | |
| egarrison-hhga | INDEL | I1_5 | segdup | * | 98.8191 | 98.7724 | 98.8658 | 94.3109 | 1046 | 13 | 1046 | 12 | 6 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6287 | 99.4366 | 99.8215 | 36.6123 | 6707 | 38 | 6709 | 12 | 10 | 83.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6133 | 99.5263 | 99.7004 | 48.1016 | 3992 | 19 | 3993 | 12 | 3 | 25.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.8579 | 99.7829 | 99.9331 | 60.2302 | 17921 | 39 | 17921 | 12 | 12 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8929 | 99.1813 | 98.6063 | 58.3656 | 848 | 7 | 849 | 12 | 3 | 25.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | het | 98.0159 | 96.7543 | 99.3107 | 87.0375 | 1729 | 58 | 1729 | 12 | 5 | 41.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 94.1349 | 0 | 0 | 8 | 12 | 8 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 95.4003 | 0 | 0 | 15 | 12 | 9 | 75.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.3791 | 93.4783 | 78.5714 | 87.6923 | 43 | 3 | 44 | 12 | 10 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2492 | 99.3985 | 99.1004 | 39.5833 | 1322 | 8 | 1322 | 12 | 10 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.5104 | 97.5104 | 97.5104 | 88.0782 | 470 | 12 | 470 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.6654 | 97.6654 | 97.6654 | 88.5803 | 502 | 12 | 502 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7011 | 97.7011 | 97.7011 | 88.5827 | 510 | 12 | 510 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4954 | 91.7293 | 95.3307 | 81.1445 | 244 | 22 | 245 | 12 | 9 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.3992 | 85.8491 | 86.9565 | 83.3031 | 91 | 15 | 80 | 12 | 5 | 41.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.6549 | 93.9583 | 97.4138 | 82.6607 | 451 | 29 | 452 | 12 | 11 | 91.6667 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3928 | 99.9061 | 98.8848 | 68.5288 | 1064 | 1 | 1064 | 12 | 12 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9542 | 98.8051 | 99.1038 | 84.0367 | 1323 | 16 | 1327 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9764 | 98.8304 | 99.1228 | 85.1466 | 1352 | 16 | 1356 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9962 | 98.8530 | 99.1398 | 85.2131 | 1379 | 16 | 1383 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2264 | 100.0000 | 92.7273 | 77.4590 | 153 | 0 | 153 | 12 | 11 | 91.6667 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | homalt | 99.3639 | 98.9124 | 99.8196 | 67.9886 | 6639 | 73 | 6639 | 12 | 8 | 66.6667 | |
| dgrover-gatk | SNP | ti | func_cds | * | 99.9347 | 99.9565 | 99.9130 | 23.1014 | 13781 | 6 | 13779 | 12 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | func_cds | het | 99.9118 | 99.9647 | 99.8590 | 25.0066 | 8501 | 3 | 8499 | 12 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7116 | 99.6705 | 99.7527 | 66.8941 | 4840 | 16 | 4840 | 12 | 9 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6764 | 99.7409 | 99.6119 | 69.3315 | 3080 | 8 | 3080 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.1458 | 71.4848 | 99.3528 | 29.1555 | 1815 | 724 | 1842 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.1654 | 74.5662 | 99.2771 | 27.6058 | 1633 | 557 | 1648 | 12 | 9 | 75.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5449 | 91.7497 | 99.6677 | 68.0131 | 3592 | 323 | 3599 | 12 | 9 | 75.0000 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | het | 69.1244 | 53.0117 | 99.3092 | 92.1654 | 1725 | 1529 | 1725 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | het | 69.1304 | 53.0161 | 99.3186 | 92.2279 | 1749 | 1550 | 1749 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.5815 | 94.1667 | 99.1234 | 62.7989 | 1356 | 84 | 1357 | 12 | 7 | 58.3333 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | * | 71.0742 | 55.1877 | 99.8043 | 69.9269 | 6117 | 4967 | 6119 | 12 | 3 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | het | 74.7468 | 59.7757 | 99.7229 | 73.2042 | 4317 | 2905 | 4319 | 12 | 3 | 25.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7592 | 99.5922 | 99.9267 | 60.1242 | 16362 | 67 | 16361 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5458 | 99.2722 | 99.8208 | 49.8653 | 6684 | 49 | 6686 | 12 | 7 | 58.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | * | 93.8073 | 95.8042 | 91.8919 | 95.1823 | 137 | 6 | 136 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | * | 88.4615 | 100.0000 | 79.3103 | 98.1481 | 46 | 0 | 46 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | het | 84.6154 | 100.0000 | 73.3333 | 98.2353 | 33 | 0 | 33 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.3783 | 98.4848 | 96.2963 | 75.6574 | 325 | 5 | 312 | 12 | 6 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |