PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
23451-23500 / 86044 show all
jmaeng-gatkINDELI6_15map_siren*
95.2066
94.4262
96.0000
86.3014
28817288125
41.6667
jmaeng-gatkSNP*HG002compoundhethomalt
99.4551
99.0262
99.8877
35.0471
10677105106761211
91.6667
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5328
99.1399
99.9287
67.1581
16829146168291212
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4749
99.2317
99.7192
49.7413
4262334262121
8.3333
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2155
98.8831
99.5502
52.7537
2656302656121
8.3333
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5328
99.1399
99.9287
67.1581
16829146168291212
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6623
99.9299
57.3191
171195817115125
41.6667
jmaeng-gatkSNP*segduphomalt
99.4625
99.0412
99.8873
88.3992
10640103106401212
100.0000
jmaeng-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3050
98.9840
99.6281
65.8771
3215333215122
16.6667
jmaeng-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0330
98.6660
99.4027
68.8043
1997271997122
16.6667
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
67.0213
64.2857
70.0000
99.4553
271528125
41.6667
jpowers-varprowlINDELD6_15map_l150_m2_e1*
80.9816
77.6471
84.6154
91.7373
6619661212
100.0000
jpowers-varprowlINDELD6_15map_l150_m2_e1het
85.4369
93.6170
78.5714
92.8844
443441212
100.0000
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
78.5047
79.2453
77.7778
68.2353
4211421212
100.0000
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
49.7306
39.3443
67.5676
84.2553
2437251211
91.6667
jpowers-varprowlSNP*func_cdshomalt
99.8926
99.9570
99.8283
23.7867
6976369761212
100.0000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.1706
98.8297
99.5138
43.4464
2449292456120
0.0000
jpowers-varprowlSNPtvmap_l125_m0_e0homalt
98.2456
97.0734
99.4465
76.8128
2156652156125
41.6667
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0141
98.5968
99.4350
71.9122
2108302112122
16.6667
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6327
95.7867
99.5512
56.7594
256911326621212
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
97.6901
96.3664
99.0506
57.6833
1273481252126
50.0000
ltrigg-rtg1SNP*map_l250_m1_e0het
96.4484
93.3754
99.7305
78.8925
44403154440124
33.3333
ltrigg-rtg1SNPtimap_l125_m1_e0homalt
99.7461
99.6016
99.8910
65.4505
1100144110011212
100.0000
ltrigg-rtg1SNPtimap_l125_m2_e0homalt
99.7531
99.6126
99.8940
67.9785
1131444113141212
100.0000
ltrigg-rtg1SNPtimap_l125_m2_e1homalt
99.7553
99.6160
99.8950
68.0185
1141444114151212
100.0000
ltrigg-rtg1SNPtimap_l150_m0_e0het
97.4302
95.2129
99.7533
66.6849
48532444853123
25.0000
ltrigg-rtg1SNPtimap_l250_m2_e0*
97.8118
95.9465
99.7510
83.9867
48052034808127
58.3333
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6813
99.7101
99.6525
34.1910
3440103441123
25.0000
ltrigg-rtg2INDELC1_5lowcmp_SimpleRepeat_quadTR_11to50*
0.0000
0.0000
86.6667
93.7931
0178120
0.0000
jli-customINDELD16_PLUSHG002complexvarhet
97.1408
95.7543
98.5680
65.7400
106047826126
50.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7500
99.1632
98.3402
56.4720
71167111211
91.6667
jli-customINDELD1_5HG002complexvarhomalt
99.9010
99.9151
99.8868
59.4114
105899105931210
83.3333
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6720
99.5235
99.8208
51.0416
6684326686125
41.6667
jli-customINDELD1_5map_l150_m1_e0*
98.3275
98.3264
98.3287
87.8326
70512706124
33.3333
jli-customINDELD1_5map_l150_m2_e0*
98.4283
98.4273
98.4293
88.4102
75112752124
33.3333
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2234
91.3356
99.4570
29.5056
216120521981211
91.6667
jli-customINDELI1_5map_siren*
99.2153
98.8353
99.5983
78.8156
2970352975124
33.3333
jli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
90.7692
100.0000
83.0986
73.1061
590591212
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
96.2264
100.0000
92.7273
75.4829
15301531212
100.0000
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.4737
82.0175
98.4211
51.7154
748164748124
33.3333
ckim-isaacINDELD1_5map_l125_m1_e0*
78.8546
65.8088
98.3516
87.2415
716372716126
50.0000
ckim-isaacINDELD1_5map_l125_m2_e0*
79.3734
66.4917
98.4456
87.8826
760383760126
50.0000
ckim-isaacINDELD1_5map_l125_m2_e1*
79.3602
66.4650
98.4635
87.9214
769388769126
50.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
86.6039
84.2520
89.0909
56.0000
1072098128
66.6667
ckim-isaacINDELD6_15map_siren*
68.4305
53.2417
95.7447
78.2743
2712382701210
83.3333
ckim-isaacINDELI16_PLUSHG002complexvarhetalt
38.7208
24.7761
88.5714
62.2302
83252931210
83.3333
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
77.6371
75.4098
80.0000
77.2727
461548129
75.0000
ckim-isaacINDELI1_5segdup*
97.2169
95.6563
98.8293
93.2182
1013461013128
66.6667
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6806
99.6087
99.7525
66.7490
48371948371210
83.3333
ckim-vqsrSNPtvmap_l250_m0_e0*
54.7664
38.3007
96.0656
98.5419
293472293120
0.0000