PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23101-23150 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 76.1376 | 62.5235 | 97.3306 | 93.7113 | 332 | 199 | 474 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 86.6360 | 76.8019 | 99.3583 | 29.3091 | 1950 | 589 | 2013 | 13 | 11 | 84.6154 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.4263 | 79.6804 | 99.3289 | 28.2061 | 1745 | 445 | 1924 | 13 | 11 | 84.6154 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 86.4817 | 76.5507 | 99.3735 | 30.6252 | 2024 | 620 | 2062 | 13 | 11 | 84.6154 | |
| qzeng-custom | INDEL | I6_15 | segdup | het | 91.8575 | 96.3855 | 87.7358 | 93.5009 | 80 | 3 | 93 | 13 | 2 | 15.3846 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | homalt | 73.6061 | 58.5465 | 99.0960 | 88.7560 | 1442 | 1021 | 1425 | 13 | 13 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7758 | 98.4234 | 97.1366 | 86.2132 | 437 | 7 | 441 | 13 | 9 | 69.2308 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.6873 | 98.6945 | 96.7005 | 84.8345 | 378 | 5 | 381 | 13 | 9 | 69.2308 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2303 | 99.2299 | 99.2308 | 68.4878 | 1675 | 13 | 1677 | 13 | 7 | 53.8462 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | homalt | 74.0705 | 59.2551 | 98.7643 | 89.0815 | 1050 | 722 | 1039 | 13 | 12 | 92.3077 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.5393 | 80.5556 | 71.1111 | 90.6832 | 29 | 7 | 32 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.5369 | 96.2865 | 98.8203 | 42.9016 | 1089 | 42 | 1089 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.6318 | 98.2079 | 99.0593 | 84.2255 | 1370 | 25 | 1369 | 13 | 3 | 23.0769 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4850 | 99.2977 | 99.6730 | 35.9284 | 3959 | 28 | 3962 | 13 | 12 | 92.3077 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.7965 | 99.6659 | 99.9274 | 59.1233 | 17900 | 60 | 17900 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7880 | 96.3753 | 97.2043 | 81.1588 | 452 | 17 | 452 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4376 | 99.3474 | 99.5280 | 38.8679 | 2740 | 18 | 2741 | 13 | 13 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | homalt | 80.6569 | 69.7183 | 95.6667 | 90.1704 | 198 | 86 | 287 | 13 | 4 | 30.7692 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 13.3333 | 93.6441 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4691 | 99.4104 | 99.5279 | 48.5945 | 2529 | 15 | 2530 | 12 | 1 | 8.3333 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3092 | 99.1720 | 99.4467 | 63.8078 | 2156 | 18 | 2157 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | * | func_cds | homalt | 97.2362 | 99.5575 | 95.0207 | 31.7280 | 225 | 1 | 229 | 12 | 2 | 16.6667 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4553 | 99.7222 | 99.1897 | 69.2866 | 1436 | 4 | 1469 | 12 | 1 | 8.3333 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1418 | 99.5624 | 98.7248 | 70.1554 | 910 | 4 | 929 | 12 | 1 | 8.3333 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.8606 | 40.8740 | 99.0058 | 44.7850 | 1113 | 1610 | 1195 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | * | 40.7080 | 29.4872 | 65.7143 | 95.2381 | 23 | 55 | 23 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.4581 | 67.4235 | 99.7403 | 24.8984 | 4603 | 2224 | 4609 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3255 | 91.3534 | 95.3846 | 81.6901 | 243 | 23 | 248 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.9265 | 61.4035 | 76.0000 | 99.4084 | 35 | 22 | 38 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | * | 51.0018 | 42.5532 | 63.6364 | 88.1295 | 20 | 27 | 21 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | * | 67.3310 | 58.9041 | 78.5714 | 86.1728 | 43 | 30 | 44 | 12 | 8 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.5634 | 83.9506 | 85.1852 | 72.6351 | 68 | 13 | 69 | 12 | 12 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | het | 96.0441 | 95.6012 | 96.4912 | 91.7411 | 326 | 15 | 330 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.6913 | 81.6092 | 85.8824 | 87.5549 | 71 | 16 | 73 | 12 | 6 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8276 | 97.3501 | 98.3099 | 87.6436 | 698 | 19 | 698 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 97.9592 | 97.5098 | 98.4127 | 88.2536 | 744 | 19 | 744 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7013 | 84.8315 | 92.9412 | 72.5806 | 151 | 27 | 158 | 12 | 4 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.9153 | 100.0000 | 90.3226 | 63.9535 | 92 | 0 | 112 | 12 | 5 | 41.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6888 | 99.5692 | 99.8086 | 46.3323 | 6241 | 27 | 6258 | 12 | 2 | 16.6667 | |