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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 457 458 459 460 461 462 463 464 465 ... 1720 1721 » 23001-23050 / 86044 show all
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6211	94.1176	99.2614	36.3011	1552	97	1747	13	13	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.3396	98.4252	90.5797	53.8462	125	2	125	13	12	92.3077
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.8920	97.5066	98.2804	67.0301	743	19	743	13	7	53.8462
dgrover-gatk	INDEL	D1_5	map_l125_m0_e0	*	97.7938	98.1855	97.4052	89.6850	487	9	488	13	3	23.0769
dgrover-gatk	INDEL	D1_5	map_l150_m1_e0	het	97.9436	98.5477	97.3469	90.2488	475	7	477	13	2	15.3846
dgrover-gatk	INDEL	D1_5	map_l150_m2_e0	het	98.0706	98.6381	97.5096	90.6250	507	7	509	13	2	15.3846
dgrover-gatk	INDEL	D1_5	map_l150_m2_e1	het	98.0028	98.4674	97.5425	90.6603	514	8	516	13	2	15.3846
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	84.9618	80.0000	90.5797	79.6460	124	31	125	13	2	15.3846
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	87.3247	79.9043	96.2644	43.3225	334	84	335	13	7	53.8462
ckim-isaac	SNP	ti	map_l150_m0_e0	*	70.8651	54.9676	99.7000	80.5441	4321	3540	4321	13	3	23.0769
ckim-isaac	SNP	ti	map_l250_m1_e0	*	66.4534	49.9017	99.4343	90.2759	2285	2294	2285	13	2	15.3846
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9687	87.2567	99.4808	35.1295	2376	347	2491	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.7368	99.2126	90.6475	53.5117	126	1	126	13	12	92.3077
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.6974	95.4955	97.9299	88.5024	636	30	615	13	5	38.4615
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.6974	95.4955	97.9299	88.5024	636	30	615	13	5	38.4615
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	94.4355	91.8750	97.1429	81.8436	441	39	442	13	12	92.3077
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.1734	95.1220	85.7143	76.3021	78	4	78	13	13	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	*	97.3838	96.3855	98.4029	90.0233	800	30	801	13	2	15.3846
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	*	97.4066	96.3827	98.4524	90.8257	826	31	827	13	2	15.3846
ckim-vqsr	INDEL	I1_5	map_l125_m2_e1	*	97.3861	96.3218	98.4742	90.8974	838	32	839	13	2	15.3846
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	95.9248	100.0000	92.1687	77.1034	153	0	153	13	12	92.3077
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2158	98.9203	99.5131	53.0673	2657	29	2657	13	2	15.3846
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	96.7625	97.5758	95.9627	75.9522	322	8	309	13	7	53.8462
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.9267	100.0000	94.0367	91.2309	205	0	205	13	11	84.6154
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.9267	100.0000	94.0367	91.2309	205	0	205	13	11	84.6154
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000
dgrover-gatk	SNP	*	HG002compoundhet	homalt	99.8980	99.9165	99.8794	34.8304	10773	9	10768	13	12	92.3077
dgrover-gatk	SNP	*	map_l100_m0_e0	homalt	99.5293	99.1738	99.8873	60.6890	11524	96	11524	13	9	69.2308
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2074	99.1262	99.2888	51.5248	1815	16	1815	13	1	7.6923
dgrover-gatk	SNP	ti	map_l100_m1_e0	homalt	99.7294	99.5323	99.9273	57.4153	17876	84	17876	13	11	84.6154
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
dgrover-gatk	SNP	ti	map_l100_m2_e1	homalt	99.7264	99.5242	99.9294	59.8793	18406	88	18406	13	11	84.6154
dgrover-gatk	SNP	tv	HG002complexvar	homalt	99.9637	99.9411	99.9863	22.7977	95055	56	95040	13	11	84.6154
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.5141	98.0044	99.0291	71.8816	1326	27	1326	13	8	61.5385
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	88.4682	80.1441	98.7217	59.1894	1001	248	1004	13	6	46.1538
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	88.4682	80.1441	98.7217	59.1894	1001	248	1004	13	6	46.1538
ckim-isaac	INDEL	I16_PLUS	*	hetalt	65.0682	48.5224	98.7366	42.1910	1018	1080	1016	13	11	84.6154
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	68.5714	57.1429	85.7143	76.6667	76	57	78	13	9	69.2308
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	76.0576	66.0714	89.6000	69.0594	111	57	112	13	4	30.7692
ckim-isaac	INDEL	I1_5	map_l100_m2_e1	*	85.4353	75.2688	98.7770	84.4363	1050	345	1050	13	5	38.4615
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	87.6652	82.2314	93.8679	58.9147	199	43	199	13	3	23.0769
mlin-fermikit	INDEL	D6_15	HG002compoundhet	hetalt	78.2401	64.3602	99.7528	23.4532	5246	2905	5245	13	13	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	77.7879	63.7655	99.7160	28.7405	4535	2577	4564	13	13	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.6790	63.6186	99.7178	29.4964	4564	2610	4593	13	13	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	50.9091	51.8519	50.0000	88.3929	14	13	13	13	13	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	83.8710	95.1220	75.0000	87.3786	39	2	39	13	13	100.0000

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